2024-11-13 REL PDBe PDBe PDBe 2020-12-17 2021-06-02 2021-06-02 2024-11-13 Foundation for Medical Research (France) DEQ20150331736 France Agence Nationale de la Recherche (ANR) ANR-19-CE11-0014 France AVP-V2R-Galphas-beta1-gamma2-Nb35(T state) Bous J Mouillac B Signaling protein, G protein-coupled receptor, Hormrne, Vasopressin, V2R, MEMBRANE PROTEIN Bous J Orcel H Floquet N Leyrat C Lai-Kee-Him J Gaibelet G Ancelin A Saint-Paul J Trapani S Louet M Sounier R Demene H Granier S Bron P Mouillac B Cryo-electron microscopy structure of the antidiuretic hormone arginine-vasopressin V2 receptor signaling complex. Sci Adv US 7 2021 34020960 doi:10.1126/sciadv.abg5628 2375-2548 7bb7 FULLOVERLAP AVP-V2R-Galphas-beta1-gamma2-Nb35(T state) AVP-V2R-Galphas-beta1-gamma2-Nb35(T state) 0 1 2 3 4 5 6 0.156 V2R and Guanine nucleotide-binding protein G(I)/G(S)/G(T) 1 1 2 3 4 Homo sapiens Nanobody 35 1 5 Lama glama Vasopressin 1 6 Homo sapiens Vasopressin V2 receptor Homo sapiens 0.047886190999999995 1 Spodoptera frugiperda LEVO MKTIIALSYIFCLVFADYKDDDDAENLYFQGASMASTTSAVPGHPSLPSLPSQSSQERPLDLEVLFQGPTRDPLLARAEL ALLSIVFVAVALSNGLVLAALARRGRRGHWAPIHVFIGHLCLADLAVALFQVLPQLAWKATDRFRGPDALCRAVKYLQMV GMYASSYMILAMTLDRHRAICRPMLAYRHGSGAHWNRPVLVAWAFSLLLSLPQLFIFAQRNVEGGSGVTDCWACFAEPWG RRTYVTWIALMVFVAPTLGIAACQVLIFREIHASLVPGPSERPGGRRRGRRTGSPGEGAHVSAAVAKTVRMTLVIVVVYV LCWAPFFLVQLWAAWDPEAPLEGAPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGLEVLFQGPQDESATTA SSSLAKDTSSLEWSHPQFEKGGGSGGGSGGGSWSHPQFEK P30518 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Homo sapiens 0.040507101999999996 1 Spodoptera frugiperda LEVO MWSHPQFEKGGGSGGSGGGSWSHPQFEKGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRR TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN P62873 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Homo sapiens 0.04572551999999999 1 Spodoptera frugiperda LEVO MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVR ACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFND VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTT PEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL P63092 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Homo sapiens 0.007861143 1 Spodoptera frugiperda LEVO MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL P59768 Nanobody 35 Lama glama 0.015140741999999999 1 Escherichia coli BL21(DE3) LEVO QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLY LQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA Vasopressin Homo sapiens 0.001086248
glycinamide c-terminal
1 LEVO CYFQNCPRG(NH2) singleParticle particle 7.5 100.0 NaCl 20.0 Hepes 0.0011 LMNG 0.001 GDN CHS 10.0 AVP 0.001 A8-35 Quantifoil R1.2/1.3 COPPER GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K2 SUMMIT (4k x 4k) COUNTING 41.19 GATAN K2 SUMMIT (4k x 4k) COUNTING 41.19 1 3566007 Coarse grain simulated with NMR constrains 4.4 FSC 0.143 CUT-OFF RELION 3.1 420953 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 RELION 3.1 emd_12129.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 145 127 181 100 97 72 181 127 145 146.61 102.87 117.45 90.0 90.0 90.0 Z Y X -2.3575056 3.1519077 -0.000000000001604 0.14792328 0.81 0.81 0.81 0.113 AUTHOR emd_12129_msk_1.map emd_12129_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 83 74 101 45 44 31 101 74 83 163.62 119.88 134.46 90.0 90.0 90.0 Z Y X -2.4434829 3.1968467 0.000000000005618 0.12648563 1.62 1.62 1.6200001 AUTHOR emd_12129_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 77 68 95 48 47 34 95 68 77 153.9 110.16 124.74 90.0 90.0 90.0 Z Y X -2.3993585 3.0710218 -0.000000000006015 0.13846496 1.6199999 1.62 1.62 AUTHOR emd_12129_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 170 170 170 0 0 0 170 170 170 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.06058249 0.15601037 0.000096454685 0.0040486106 1.62 1.62 1.62 AUTHOR emd_12129_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 170 170 170 0 0 0 170 170 170 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.020587575 0.08062306 0.00009481811 0.0029005639 1.62 1.62 1.62 AUTHOR emd_12129_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 170 170 170 0 0 0 170 170 170 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.021952596 0.08222645 0.00009809126 0.0029002617 1.62 1.62 1.62 AUTHOR