2024-10-23 REL PDBe PDBe PDBe 2020-12-17 2021-06-02 2021-06-02 2024-10-23 Foundation for Medical Research (France) DEQ20150331736 France Agence Nationale de la Recherche (ANR) ANR-19-CE11-0014 France AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state) Bous J Mouillac B Signaling protein, G protein-coupled receptor, Hormone, Vasopressin, V2R, MEMBRANE PROTEIN Bous J Orcel H Floquet N Leyrat C Lai-Kee-Him J Gaibelet G Ancelin A Saint-Paul J Trapani S Louet M Sounier R Demene H Granier S Bron P Mouillac B Cryo-electron microscopy structure of the antidiuretic hormone arginine-vasopressin V2 receptor signaling complex. Sci Adv US 7 2021 34020960 doi:10.1126/sciadv.abg5628 2375-2548 7bb6 FULLOVERLAP AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state) AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state) 0 1 2 3 4 5 6 0.156 V2R and Guanine nucleotide-binding protein G(I)/G(S)/G(T) 1 1 2 3 4 Homo sapiens arginine-vasopressin 1 5 Homo sapiens Nanobody 35 1 6 Lama glama Vasopressin V2 receptor Homo sapiens 0.047886190999999995 1 Spodoptera frugiperda LEVO MKTIIALSYIFCLVFADYKDDDDAENLYFQGASMASTTSAVPGHPSLPSLPSQSSQERPLDLEVLFQGPTRDPLLARAEL ALLSIVFVAVALSNGLVLAALARRGRRGHWAPIHVFIGHLCLADLAVALFQVLPQLAWKATDRFRGPDALCRAVKYLQMV GMYASSYMILAMTLDRHRAICRPMLAYRHGSGAHWNRPVLVAWAFSLLLSLPQLFIFAQRNVEGGSGVTDCWACFAEPWG RRTYVTWIALMVFVAPTLGIAACQVLIFREIHASLVPGPSERPGGRRRGRRTGSPGEGAHVSAAVAKTVRMTLVIVVVYV LCWAPFFLVQLWAAWDPEAPLEGAPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGLEVLFQGPQDESATTA SSSLAKDTSSLEWSHPQFEKGGGSGGGSGGGSWSHPQFEK P30518 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Homo sapiens 0.040507101999999996 1 Spodoptera frugiperda LEVO MWSHPQFEKGGGSGGSGGGSWSHPQFEKGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRR TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN P62873 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Homo sapiens 0.04572551999999999 1 Spodoptera frugiperda LEVO MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVR ACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFND VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTT PEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL P63092 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Homo sapiens 0.007861143 1 Spodoptera frugiperda LEVO MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL P59768 arginine-vasopressin Homo sapiens 0.001086248
C-terminal 9-glycinamide
1 LEVO CYFQNCPRG(NH2) Nanobody 35 Lama glama 0.015140741999999999 1 Escherichia coli BL21(DE3) LEVO QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLY LQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA singleParticle particle 4 7.5 100.0 NaCl Sodium chloride 20.0 HEPES 0.0011 LMNG 0.001 GDN 0.002 CHS 10.0 AVP 0.001 A8-35 Quantifoil R1.2/1.3 COPPER 200 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 2.2 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 1 17290 41.19 GATAN K2 SUMMIT (4k x 4k) COUNTING 1 8490 50.19 1 3566007 1 C1 4.2 FSC 0.143 CUT-OFF 147524 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 6 emd_12128.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 145 127 181 100 97 72 181 127 145 146.61 102.87 117.45 90.0 90.0 90.0 Z Y X -2.2831519 3.1301532 -0.000000000002919 0.15445293 0.81 0.81 0.81 0.16 AUTHOR AB INITIO MODEL REAL 87.609999999999999 emd_12128_msk_1.map emd_12128_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.014298142 0.03289087 -0.0000015920408 0.0010880496 0.81 0.81 0.81 AUTHOR emd_12128_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.008558199 0.02513958 -0.0000015814614 0.0013177242 0.81 0.81 0.81 AUTHOR emd_12128_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 275.4 275.4 275.4 90.0 90.0 90.0 X Y Z -0.009123551 0.024326185 -0.0000016026203 0.0013123725 0.81 0.81 0.81 AUTHOR