REL PDBe PDBe PDBe 2006-03-31 2006-03-31 2008-03-31 2011-05-26 Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. Spagnolo L Rivera-Calzada A Pearl LH Llorca O Spagnolo L Rivera-Calzada A Pearl LH Llorca O Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. MOLECULAR CELL 22 511 519 2006 16713581 doi:10.1016/j.molcel.2006.04.013 Macromolecular Complex containing DNA, DNAPKcs, Ku70 and Ku80 Macromolecular Complex containing DNA, DNAPKcs, Ku70 and Ku80 One molecule of DNAPKcs and one Ku70-Ku80 dimer bound to one DNA molecule 4 0.65 DNA-PKcs Homo sapiens Human HeLa Nucleus Nucleus 0.47 1 Monomer true HeLa cells GO:0004672 IPR000403 Ku70 Homo sapiens Human HeLa Nucleus 0.07 1 monomer true HeLa cells GO:0006303 IPR006165 Ku80 Homo sapiens Human HeLa cells Nucleus 0.085 1 monomer true HeLa cells GO:0006302 IPR011210 DNA DNA DOUBLE HELIX true singleParticle particle 7.5
20 mM Hepes, 200 mM KCl, 0.1 mM DTT, 0.5 mM EDTA
400 mesh carbon coated Rhodium-Copper grids
 ETHANE 90 HOMEMADE PLUNGER
Vitrification instrument: home made plunger
Blot for a few seconds before plunging FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.26 3.0 7.0 50000.0 GATAN LIQUID NITROGEN 90 FFT with ssCCD
Microscope model: TECNAI G2 200 kV, FEI.
KODAK SO-163 FILM OTHER 10 32
Scanner: MINOLTA Dimage Scan Multi Pro
16. side entry liquid-nitrogen cooled cryo specimen holder. Eucentric 0 0
Each partcile using CTFIND3 and EMAN.
 C1 OTHER 32.0 FSC 0.5 CUT-OFF EMAN 4189 emd_1208.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 72 72 72 -36 -36 -36 72 72 72 312.4 312.4 312.4 90 90 90 X Y Z -3.54159 9.427670000000001 -0.281887 0.850615 4.4 4.4 4.4 1.0 3D structure of the DNA-bound DNAPKcs/Ku70/ku80 complex using cryoEM
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