2024-05-01 REL PDBe PDBe PDBe 2020-12-09 2021-06-09 2021-06-09 2024-05-01 Whole MiniTRAPPIII Galindo A Munro S Rab1, GEFs, Golgi, TRAPP complexes, EXOCYTOSIS Galindo A Planelles-Herrero VJ Degliesposti G Munro S Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1. Embo J. UK 40 e107608 e107608 2021 34018214 doi:10.15252/embj.2020107608 1460-2075 0897 EMJODG EMD-12058 other EM volume 7b70 FULLOVERLAP MiniTRAPPIII: TRAPPIII complex without the C12 and C13 specific subunits MiniTRAPPIII: TRAPPIII complex without the C12 and C13 specific subunits 0 1 2 3 4 5 6 7 8 9 Drosophila melanogaster 0.453 Trafficking protein particle complex subunit Drosophila melanogaster 0.020492309 2 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MSRQASRLDAKKVNSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNMGMRLIEDFLARTSAPRCLEMRETADRIQQA FRIYLNIQPTISNWSPASDEFSLVFDSNPLTEFVELPPDLTNLRYSAILSGCIRGALEMVQLEVQCWFVQDQLKGDNVTE LRVKFVRRLEEVIPAGED Q9VSY8 GEO08327p1 Drosophila melanogaster 0.01759723 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVSRFKDELETMKFICTDFWMLIYKKQVDNLRT NNHGMYVVQDKAFRFLTRISPGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVNRN Q9VF82 Trafficking protein particle complex subunit Drosophila melanogaster 0.016990562 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MTIFNLYIFDKFGTLLHYAEWNRTKKSGITREEEAKLTYGMLFSIKSFVSKISPHDPKEGFLYYKTNRYALHYLETPSGL KFVLNTDTTAINVKELLQQLYAKVWVEFVVRDPLWTPGTVVTSELFQSKLDEFVRQSPIFGIRNI Q9VA95 Trafficking protein particle complex subunit Drosophila melanogaster 0.024736486 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MIIYGVYIVSKSGGLIFNLDNNVPRIEHEKTFTYPLDLVLDYDSKKVSVSFNRKDGINVGHVLVAVNGMPVNGVTLDDGR DVRTTLDAPENYPINLKFSRPKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTLTGIKFIIISE TGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQELLAQVEKTGISNIDK Q9VLI9 Probable trafficking protein particle complex subunit 2 Drosophila melanogaster 0.016669977 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSIDRFNQWFVSAFITASQI RFIIVHDNKNDEGIKNFFNEMYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS Q9VUZ1 Trafficking protein particle complex subunit 5 Drosophila melanogaster 0.022371812 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MEKLEALKISSMRPRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRVFTVPELQTRLHDLGQDVGTRIIDLYFVRER SSKRETKLTQMLLFVKTTVWKNLFGKEAEKLEHANDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTAGIVEAVLTNC GFPCKVTAHWHKGTTYMVKFEDFVIARDKQMEEK Q7K2Q8 TRAPPC2L Drosophila melanogaster 0.015511825999999998 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MAFCIAVIGKDNAPLYLTTSDMEQELELQYHVNAALDVVEEKCLIGKGAPESKELYLGLLYSTENHKIYGFVTNTRVKFI VVIDSSNVALRENEVRAIFRNLHLLYTDAICNPFYIPGESLTSKKFDRAVQKLMSGTA A1Z8I0 FI18195p1 Drosophila melanogaster 0.028378544999999998 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREW Q9VW22 Trafficking protein particle complex subunit 11 Drosophila melanogaster 0.081847164 1 Spodoptera aff. frugiperda 1 BOLD-2017 LEVO MTMDATALPSELLVTPQPLVGFCGLDTARVSVHKAVWEAFSGSLQRKAADRAAVQYKLLPPNYEFPVAKPKRASYEWYHP KGILKRNWMLKHLHVLPSVVVLFQDMEWNDLQWTEKQVQCAAIVQALKNTLQERNTRLCLVLLQRAAPLPPGEDLLAAER AASLTNACGITSKMLFILPHTEHLTGYALRLESAFLDMAQSYYALMSKRIRNHRDQLTAAHTSLKIRHQFKLGFVAEMRQ DFSTGQKHYFQAYANLDEIRINDGNCLEIKTLAGFLNYKICRLMFKLKTPRDAINQFIIHVEKHKSRVGFKDLAFEHHAW LSTQHSVFAELFCEAIKNGLPALQTQHPGIYYHKAAEFVMKRRDAAMEAYAAMQASSEATPTPIQNPLSLYTEFFGIRAV KTGDLVAEQQANMQLCDQERSYNHSAAIIALLSQAMAQFKIYKCLRFRKKLAIDMAEEYLKSGDHAKALTLYSLMLPDYR QEKWTTIFTDVLLKTLRCALLSGSVADYIACSVEALSLRHQSDQSERILILENLWQVFQGVPPMPKTQLTPEAQALWTSA LANVKSPIQIDLDKVNDVVEMCATFERVQLSNDDLLQLQLIVRVLTDIPLRIRSFHVILADAGNPQNSYKLEALKYFCFP TLTQLRGQKQPDDEQLENPSQEPKNFEKNMRLEPGSYYQLFCSTEAQQFHENTQLRIVRLEAHMGTDQVAALLTCSSN Q8IRE3 singleParticle particle 0.5 7.4 50.0 Hepes-KOH 250.0 KAc 1.0 DTT 0.005 Igepal C-630 Quantifoil COPPER 400 CARBON HOLEY GLOW DISCHARGE AIR 0.001 ETHANE 100 285.15 FEI VITROBOT MARK III FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.5 2.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) COUNTING 1 3443 0.3 45.6 1 1242082 C1 4.0 FSC 0.143 CUT-OFF RELION 3.1.1 486758 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RELION 3.1.1 RELION 3.1.1 emd_12063.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 502.56 502.56 502.56 90.0 90.0 90.0 X Y Z -0.014434552 0.05975762 0.000024555075 0.0016248442 1.2564 1.2564 1.2564 0.006 AUTHOR emd_12063_msk_1.map