<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1205" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2006-03-23</deposition>
         <header_release>2006-03-23</header_release>
         <map_release>2006-08-09</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Three-dimensional structure of a type III glutamine synthetase by single-particle reconstruction.</title>
      <authors_list>
         <author>van Rooyen JM</author>
         <author>Abratt VR</author>
         <author>Sewell BT</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">van Rooyen JM</author>
               <author order="2">Abratt VR</author>
               <author order="3">Sewell BT</author>
               <title>Three-dimensional structure of a type III glutamine synthetase by single-particle reconstruction.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>361</volume>
               <first_page>796</first_page>
               <last_page>810</last_page>
               <year>2006</year>
               <external_references type="PUBMED">16879836</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2006.06.026</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>B.fragilis GlnN purified from E.coli</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>B.fragilis GlnN purified from E.coli</name>
            <oligomeric_state>One dodecamer of GlnN</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.3</experimental>
               <theoretical units="MDa">0.99</theoretical>
               <method>Calibrated gel-filtration</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="GSIII">GlnN</name>
            <natural_source database="NCBI">
               <organism ncbi="817">Bacteroides fragilis</organism>
               <strain>B. fragilis BF-1</strain>
               <tissue>E.coli cytoplasm</tissue>
               <cell>E.coli</cell>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.99</experimental>
               <theoretical units="MDa">1.3</theoretical>
            </molecular_weight>
            <details>Recombinant GlnN purified from GlnA deficient E.coli mutant; SwissProt P15623</details>
            <number_of_copies>12</number_of_copies>
            <oligomeric_state>Dodecamer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pJS139</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="INTERPRO">IPR008147</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.25</concentration>
               <buffer>
                  <ph>7.15</ph>
                  <details>10 mM Imidazole-HCl,   10 mM MnCl2</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Aliquots (10ul) were applied to 300  mesh       copper
        grids,       which had been coated with thin carbon
        support       film and previously       glow discharged in air
        for       20       seconds, before being stained with       2%
        uranyl acetate       solution using the droplet method.</details>
               </staining>
               <grid>
                  <details>300 mesh copper grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>65882.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <specialist_optics>
                  <energy_filter>
                     <name>LEO OMEGA</name>
                  </energy_filter>
               </specialist_optics>
               <details>Leo 912 TEM</details>
               <date>2004-05-13</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">PROSCAN TEM-PIV (2k x 2k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">14</sampling_interval>
                     </digitization_details>
                     <number_real_images>160</number_real_images>
                     <details>Images were digitized using an Ilford Leafscan       and
        downsized by a factor of 2</details>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C6</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">21.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>12587</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>166</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="2001">
      <file>emd_1205.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>80</col>
         <row>80</row>
         <sec>80</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>80</x>
         <y>80</y>
         <z>80</z>
      </spacing>
      <cell>
         <a units="&#8491;">340</a>
         <b units="&#8491;">340</b>
         <c units="&#8491;">340</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>0.0</minimum>
         <maximum>0.191964</maximum>
         <average>0.00442323</average>
         <std>0.0211771</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.25</x>
         <y units="&#8491;">4.25</y>
         <z units="&#8491;">4.25</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0128</level>
         </contour>
      </contour_list>
      <annotation_details>GSIII from Bacteroides fragilis (negative stain reconstruction)</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1205::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Situs</name>
               </software>
            </software_list>
            <details>Protocol: rigid body</details>
            <target_criteria>CC score</target_criteria>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>