2024-05-01 REL PDBe PDBe PDBe 2020-11-24 2020-12-09 2020-12-09 2024-05-01 Max Planck Society Germany TRPC4 in complex with Calmodulin Vinayagam D Quentin D ION CHANNEL, TRPC4, COMPLEX, MEMBRANE PROTEIN, CALMODULIN, TRANSPORT PROTEIN Vinayagam D Quentin D Yu-Strzelczyk J Sitsel O Merino F Stabrin M Hofnagel O Yu M Ledeboer MW Nagel G Malojcic G Raunser S Structural basis of TRPC4 regulation by calmodulin and pharmacological agents. Elife US 9 2020 33236980 doi:10.7554/eLife.60603 2050-084X EMD-11968 other EM volume 7b1g FULLOVERLAP TRPC4 membrane protein in complex with calmodulin TRPC4 membrane protein in complex with calmodulin 0 1 2
TRPC4 was solubilised in LMNG detergent
0.126 Transient receptor potential cation channel subfamily c member 4a 1 1 Danio rerio plasma membrane Calmodulin-1 1 2 Mus musculus Transient receptor potential cation channel subfamily c member 4a Danio rerio 0.105204641 4 Homo sapiens LEVO GSQLYFRRTDNSSYRDRIPLRIVRAESELSTQEKSYLSAVEKGDYASVKLALEEAEIYFKININCIDPLGRTALLIAIEN ENLEIIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKM LVQKGVSVPQPHEVRCNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKAE YEELSHQCKHFAKDLLDQTRSSRELELILNFRDDMNLLQDEANNELARLKLAIKYRQKEFVAQPNCQQLLASRWYDEFPG WRRRHWAGKLITCVFIGLMFPLLSLCYLVAPKSRYGLFIRKPFIKFICHTASYLTFLFLLLLASQHIVSNNPDRQGPKPT TVEWMILPWVLGFIWTEIKQMWDGGFQDYIHDWWNLMDFVMNSLYLATISLKIVAYVKYSGCKPRDTWEMWHPTLVAEAV FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYENSEGMTCKGIRCERQNNA FSTLFETLQSLFWSIFGLISLYVTNVKADHKFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKFART KLWMSYFEEGGTLPPPFNIIPSPKSICYLITWIKVHVFKRRSKRTETFGTLGRRAAENVRLNHQYQEVLRNLVKRYVAAM IRDAKTEEGLTEENFKELKQDISSFRYEVIGMMKGNRKSTRANKSDTSASDVSHPEGSLQYSSALKQNSKLHLYDVTTAL QQQNSEEAKASLGCLANGSAVVLTEPILKDKARSDFPKDFTDFGLFPKKQNPNKIYSLAEEATESDPDILDWGKEDKPLA GKVEQDVNESKCLMEEDERVLEEQEMEHIASSHEH U3N7D8 Calmodulin-1 Mus musculus 0.016852544999999997 1 Escherichia coli BL21 LEVO MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK P0DP26 CALCIUM ION 4.0078e-05 4 CA (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate 0.00036836 4 44E singleParticle particle 0.35 7.4 20.0 C4H11NO3 TRIS 150.0 NaCl sodium chloride 0.003 C47H88O26 LMNG Quantifoil R2/1 COPPER CARBON HOLEY GLOW DISCHARGE AIR ETHANE 95 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 0.001 1.5 2.8000000000000003 130000.0 59000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 160.0 190.0 Cs corrector first generation GIF Quantum LS 20 GATAN K2 QUANTUM (4k x 4k) COUNTING 3838 3710 1-80 1 7972 10.0 88.52 1 678331 EMD-4339 4 C1 FOURIER SPACE 3.6 FSC 0.143 CUT-OFF SPHIRE MERIDIEN 160829 NOT APPLICABLE
Used EMD-4339 as a reference
 MAXIMUM LIKELIHOOD SPHIRE MERIDIEN 10 SPHIRE 1.3 SORT3D
Symmetry expansion was used to quadruple the Particles. From the best classes after 3d classification duplicates were removed that resulted in 160829 particles
 emd_11985.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 244.8 244.8 244.8 90.0 90.0 90.0 X Y Z -0.013438393 0.023819605 0.00013845753 0.0009158334 0.85 0.85 0.85 0.0052 AUTHOR 6GIK PDB experimental model 2LV6 PDB experimental model FLEXIBLE FIT Correlation coefficient REAL 58.039999999999999