2024-10-23 REL PDBe PDBe PDBe 2020-11-23 2021-02-10 2021-02-10 2024-10-23 SARS-CoV-spike RBD bound to two neutralising nanobodies Hallberg BM Das H spike glycoprotein, SARS-CoV-2, nanobody, VIRAL PROTEIN Koenig PA Das H Liu H Kummerer BM Gohr FN Jenster LM Schiffelers LDJ Tesfamariam YM Uchima M Wuerth JD Gatterdam K Ruetalo N Christensen MH Fandrey CI Normann S Todtmann JMP Pritzl S Hanke L Boos J Yuan M Zhu X Schmid-Burgk JL Kato H Schindler M Wilson IA Geyer M Ludwig KU Hallberg BM Wu NC Schmidt FI Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape Science US 371 2021 33436526 doi:10.1126/science.abe6230 1095-9203 0038 SCIEAS 7b17 FULLOVERLAP Structure of SARS-CoV-2 spike RBD in complex with SARS-CoV-2 neutralizing biparatopic nanobody VE Structure of SARS-CoV-2 spike RBD in complex with SARS-CoV-2 neutralizing biparatopic nanobody VE 0 1 2
Density from localised reconstruction from full spike - VE data.
0.3 Spike glycoprotein 1 1 Severe acute respiratory syndrome coronavirus 2 biparatopic nanobody VE 1 2 Vicugna pacos Spike protein S1 Severe acute respiratory syndrome coronavirus 2 0.02190157 1 Homo sapiens LEVO NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK P0DTC2 SARS-CoV-2 neutralizing biparatopic nanobody VE,nanobody E from Lama glama,SARS-CoV-2 neutralizing biparatopic nanobody VE,nanobody E from Lama glama Lama glama 0.030102807
Nanobody V from Vicugna pacos and nanobody E from Lama glama connected with a 15 residue linker,Nanobody V from Vicugna pacos and nanobody E from Lama glama connected with a 15 residue linker, 1-119 nanobody from Alpacka, 120-136: linker, 137-263: nanobody from Llama, 264-283: cloning and purification tag,Nanobody V from Vicugna pacos and nanobody E from Lama glama connected with a 15 residue linker,Nanobody V from Vicugna pacos and nanobody E from Lama glama connected with a 15 residue linker, 1-119 nanobody from Alpacka, 120-136: linker, 137-263: nanobody from Llama, 264-283: cloning and purification tag
1 Escherichia coli LEVO QVQLVETGGGLVQPGGSLRLSCAASGFTFSSYAMGWARQVPGKGLEWVSYIYSDGSTEYQDSVKGRFTISRDNAKSTVYL QMNSLKPEDTAVYYCATEGSLGGWGRDFGSWGQGTQVTVSSGGGGSGGGGSGGGGSQVQLVETGGGFVQPGGSLRLSCAA SGVTLDYYAIGWFRQAPGKEREGVSCIGSSDGRTYYSDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCALTVGTYY SGNYHYTCSDDMDYWGKGTQVTVSSGGYPYDVPDYAGHHHHHH 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 1 NAG singleParticle particle 7.4 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 1.5 48.6 1 BACK PROJECTION 4.01 FSC 0.143 CUT-OFF cryoSPARC 2.15 92938 PROJECTION MATCHING cryoSPARC 2.15 PROJECTION MATCHING cryoSPARC 2.15 emd_11980.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 90 62 71 255 275 264 71 62 90 72.42 63.239998 91.799995 90.0 90.0 90.0 Z Y X -3.3222024 13.063079 -0.000000000003959 0.30428848 1.02 1.02 1.02 0.472 AUTHOR Resolve Cryo-EM in the PHENIX suite used on the half-maps from localised reconstruction. FLEXIBLE FIT REAL emd_11980_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 612.0 612.0 612.0 90.0 90.0 90.0 X Y Z -1.2953124 3.357581 -0.0003680908 0.1563034 1.02 1.02 1.02 AUTHOR Half map 1 from the localised reconstruction. emd_11980_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 612.0 612.0 612.0 90.0 90.0 90.0 X Y Z -1.3705796 4.341262 -0.00037720628 0.15664276 1.02 1.02 1.02 AUTHOR Half map 1 from the localised reconstruction.