Structure of the human THO - UAP56 complex (Map B)

2024-05-01 REL PDBe PDBe PDBe 2020-10-17 2020-12-16 2020-12-16 2024-05-01 Swiss National Science Foundation P2GEP3_188343 Austria Structure of the human THO - UAP56 complex (Map B) Hohmann U Puehringer T mRNA, nucleocytoplasmic transport, R-loop, gene expression, GENE REGULATION Puhringer T Hohmann U Fin L Pacheco-Fiallos B Schellhaas U Brennecke J Plaschka C Structure of the human core transcription-export complex reveals a hub for multivalent interactions. Elife US 9 2020 33191911 doi:10.7554/eLife.61503 2050-084X EMD-11853 other EM volume

Map A

EMD-11854 other EM volume

Map C

EMD-11855 other EM volume

Map D

EMD-11856 other EM volume

Map E

7apk FULLOVERLAP THO - UAP56 THO - UAP56 0 1 2 3 4 5 6 7 8 1.836 THO complex 1 1 2 3 4 5 6 8 Homo sapiens Spliceosome RNA helicase DDX39B 1 7 Homo sapiens THO complex subunit 1 Homo sapiens 0.081138383 4 Trichoplusia ni LEVO MGKPIPNPLLGLDSTGSGKPIPNPLLGLDSTGSGKPIPNPLLGLDSTLEVLFQGPSPTPPLFSLPEARTRFTKSTREALN NKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPL DQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENV TVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEE VLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLT DEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPEDFLGKG PTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPH FFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWK ILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS Q96FV9 THO complex subunit 2 Homo sapiens 0.141584594 4 Trichoplusia ni LEVO MKHHHHHHHHHHSAGLEVLFQGPMAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVI KGNLKHEQASNVLSDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGL IKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEV FECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMD EHKREIAEAKQIVRKLTMVVLSSEKMDEREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHK LIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGK SFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPL LVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCII EALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTM EQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTL VQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVM APVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDK LLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCY DRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVV HKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRK SYMIPENEFHHKDPPPRNAVASVQNG Q8NI27 THO complex subunit 3 Homo sapiens 0.043279445 4 Trichoplusia ni LEVO MKGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKTAGLEVLFQGPMAVPAAAMGPSALGQSGPGSMAPWCSVSSGPSRYVL GMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFV TASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNM FFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSH DGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS Q96J01 THO complex subunit 5 homolog Homo sapiens 0.078652898 4 Trichoplusia ni LEVO MSSESSKKRKPKVIRSDGAPAEGKRNRSDTEQEGKYYSEEAEVDLRDPGRDYELYKYTCQELQRLMAEIQDLKSRGGKDV AIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLV SLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKALFKPPEDSQDDESDSDAEEEQ TTKRRRPTLGVQLDDKRKEMLKRHPLSVMLDLKCKDDSVLHLTFYYLMNLNIMTVKAKVTTAMELITPISAGDLLSPDSV LSCLYPGDHGKKTPNPANQYQFDKVGILTLSDYVLELGHPYLWVQKLGGLHFPKEQPQQTVIADHSLSASHMETTMKLLK TRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAKVVSRLVKWVTIAHEDYMELHFTKDIVDAGLAGDTNLYYMALIERGT AKLQAAVVLNPGYSSIPPIFQLCLNWKGEKTNSNDDNIRAMEGEVNVCYKELCGPWPSHQLLTNQLQRLCVLLDVYLETE SHDDSVEGPKEFPQEKMCLRLFRGPSRMKPFKYNHPQGFFSHR Q13769 THO complex subunit 6 homolog Homo sapiens 0.037577875 4 Trichoplusia ni LEVO MERAVPLAVPLGQTEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVY SMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTF TRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA LTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAA GNSCRVDVFTNLGYRAFSLSF Q86W42 THO complex subunit 7 homolog Homo sapiens 0.023782013999999997 4 Trichoplusia ni LEVO MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMEN YEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKL ELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDPKP Q6I9Y2 Spliceosome RNA helicase DDX39B Homo sapiens 0.051612163999999995 4 Escherichia coli LEVO GPMKGSAWSHPQFEKLEVLFQGPMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELL RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSV QRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR AGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR Q13838 3.6.4.13 THOC2 anchor (putative) Homo sapiens 0.003166895 2 Trichoplusia ni LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK) singleParticle particle 7.9 25.0 C8H18N2O4S Hepes 50.0 KCl potassium chloride 1.0 C9H15O6P TCEP 2.0 C3H8O3 Glycerol ETHANE FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 2 26303 3.8 50.0 1 1570265 3.3 FSC 0.143 CUT-OFF 195098 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_11857.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 589.60004 589.60004 589.60004 90.0 90.0 90.0 X Y Z -0.10298025 0.27440223 -0.00020269188 0.0045365933 1.34 1.34 1.34 0.05257 AUTHOR ::::EMDATABANK.org::::EMD-11857:::: Map B sharpened (Map sharpening B-factor -132 A2) AB INITIO MODEL REAL emd_11857_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 589.60004 589.60004 589.60004 90.0 90.0 90.0 X Y Z -0.03411986 0.1132922 -0.00020269188 0.003015456 1.34 1.34 1.34 AUTHOR ::::EMDATABANK.org::::EMD-11857:::: Map B unsharpened