<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-11849" version="3.0.3.0">
    <admin>
        <current_status>
            <date>2023-05-17</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-10-15</deposition>
            <header_release>2022-05-04</header_release>
            <map_release>2022-05-04</map_release>
            <update>2023-05-17</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Biotechnology and Biological Sciences Research Council (BBSRC)</funding_body>
                <country>United Kingdom</country>
            </grant_reference>
        </grant_support>
        <title>Asymmetric reconstruction of a native Bunyamwera virus ribonucleoprotein</title>
        <authors_list>
            <author>Hopkins FR</author>
            <author>Fontana J</author>
            <author>Barr JN</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0003-3716-7448" order="1">Hopkins FR</author>
                    <author ORCID="0000-0002-9898-4997" order="2">Alvarez-Rodriguez B</author>
                    <author ORCID="0000-0001-6431-2191" order="3">Heath GR</author>
                    <author order="4">Panayi K</author>
                    <author ORCID="0000-0001-9190-5670" order="5">Hover S</author>
                    <author ORCID="0000-0002-1467-3674" order="6">Edwards TA</author>
                    <author ORCID="0000-0002-9035-2039" order="7">Barr JN</author>
                    <author ORCID="0000-0002-9084-2927" order="8">Fontana J</author>
                    <title>The Native Orthobunyavirus Ribonucleoprotein Possesses a Helical Architecture.</title>
                    <journal_abbreviation>Mbio</journal_abbreviation>
                    <country>US</country>
                    <volume>13</volume>
                    <first_page>e0140522</first_page>
                    <last_page>e0140522</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">35762594</external_references>
                    <external_references type="DOI">doi:10.1128/mbio.01405-22</external_references>
                    <external_references type="ISSN">2150-7511</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-11847</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-11849</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Native ribonucleoprotein extracted from Bunyamwera virus</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Native ribonucleoprotein extracted from Bunyamwera virus</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="35304">Bunyamwera virus</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>NITROGEN</cryogen_name>
                        <instrument>FEI VITROBOT MARK II</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_magnification>130000.0</nominal_magnification>
                    <specialist_optics>
                        <phase_plate>VOLTA PHASE PLATE</phase_plate>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_exposure_time units="s">9.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/Å^2">51.3</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="OTHER">
                    <details>Previously generated sub-tomogram average of the same sample</details>
                </startup_model>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">15.0</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>5077</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="501">
        <file>emd_11849.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>50</col>
            <row>50</row>
            <sec>50</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>-49</sec>
        </origin>
        <spacing>
            <x>50</x>
            <y>50</y>
            <z>50</z>
        </spacing>
        <cell>
            <a units="Å">214.00002</a>
            <b units="Å">214.00002</b>
            <c units="Å">214.00002</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.075650975</minimum>
            <maximum>0.17875257</maximum>
            <average>0.004170107</average>
            <std>0.029601403</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">4.28</x>
            <y units="Å">4.28</y>
            <z units="Å">4.28</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0709</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-11849::::</label>
    </map>
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