Schizosaccharomyces pombe RNA polymerase I (elongation complex)

2025-12-17 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATA_COLLECTION em_admin _em_admin.last_update PDBe PDBe 2020-10-14 2021-02-24 2021-02-24 2025-12-17 German Research Foundation (DFG) SFB 960 (TP-A8) Germany German Research Foundation (DFG) EN 1204/1-1 Germany Schizosaccharomyces pombe RNA polymerase I (elongation complex) Heiss F Daiss J TRANSCRIPTION Heiss FB Daiss JL Becker P Engel C Conserved strategies of RNA polymerase I hibernation and activation. Nat Commun UK 12 758 758 2021 33536435 doi:10.1038/s41467-021-21031-8 2041-1723 7aoe FULLOVERLAP EMDB EMD-11842 associated EM volume

S. pombe RNA polymerase I - elongation complex S. pombe RNA polymerase I - elongation complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 S. pombe RNA polymerase I - elongation complex 1 1 2 3 4 5 6 7 8 9 10 12 Schizosaccharomyces pombe (strain 972 / ATCC 24843) DNA-directed RNA polymerases I and III subunit RPAC2 1 11 Schizosaccharomyces pombe (strain 972 / ATCC 24843) DNA, RNA 1 13 14 15 synthetic construct DNA-directed RNA polymerase I subunit rpa1 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.18948965599999998 1 LEVO MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHLDERYCPGHFGHI VLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSD SEDSGLGHDDIAKDAATLMRIRDEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRK EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKNKSKSPIAHGA KYMTSTEVRNHLRRLFVKENVVLSRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQ IASLSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMM GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIE QRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSY NADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDE TGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSVLFDDGELLCGILDKSS FGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLS TDSPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLL GQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHL EGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYK YDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQ SIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVR VTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQ ALKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDE SVSDFKERKLLEKQNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINTEKLLMVSLVEKACSETVIHE IPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAV DPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF TPVVDSPAN P15398 2.7.7.6 Probable DNA-directed RNA polymerase I subunit RPA2 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.13185496900000002 1 LEVO MSFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVD EVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELI AHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFR FHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAED LTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIR AQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVH RGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGC VQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKH ISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRY RTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKR RRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGD SECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACH GLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNL TRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAK PALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK Q9P7X8 2.7.7.6 DNA-directed RNA polymerases I and III subunit RPAC1 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.039205547 1 LEVO MAAVDRSRTEISVLSDRVTDVGSVDFPGYYFDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAE IPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDP KRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTI HILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKP DVLFIKSIAVLKSKCLAVKSSLQNISSD O94616 DNA-directed RNA polymerase I subunit rpa14 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.017008438999999997 1 LEVO MATECPPKMILRKSEKLDKDASSKFLNRYIQTIERFQDEKSGSESVLSQLNRVLMYLKGEEIPLISLNLPVQGPPTEELI IPPEEMLETKEEESLKHAREENDDLHLDKETKKRLKKEKKKAARREKEEARKAKADTTQGVGEKEQS Q9P7P1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.023954504 1 LEVO MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP SVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELL DRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYRICA Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC2 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.015742496999999998 1 LEVO MSDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYER ARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAELI P36595 DNA-directed RNA polymerase I subunit rpa43 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.019406353999999997 1 LEVO MPDLSLYKQTVDLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLV FSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTTEEQGRWKTNDGNILEPGKDLEFVVDGIQRE AGLTMVQGTLANS O43036 DNA-directed RNA polymerases I, II, and III subunit RPABC3 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.014317317999999999 1 LEVO MSESVLLDEIFTVTSVDKQKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPDLKEAADYIMYGKV YRVEEAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLDHVYLLLRR Q92399 DNA-directed RNA polymerase I subunit RPA12 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.013127666999999999 1 LEVO MSAIGSLIFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVESQKEEAATIEEKC PKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN O94703 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.008286801 1 LEVO MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLLCYNPLSKQKNL O13877 DNA-directed RNA polymerases I and III subunit RPAC2 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.013734477999999998 1 Schizosaccharomyces pombe LEVO MAAMTDVTDPSSVAMESATEKIIILPGHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQ TAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPRDTSTTMEVDG Q09177 DNA-directed RNA polymerases I, II, and III subunit RPABC4 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 972 / ATCC 24843 0.007216495 1 LEVO MNHPTSTGGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR P48011 non-template DNA synthetic construct 0.012085806 1 (DG)(DG)(DC)(DA)(DG)(DT)(DA)(DC)(DT)(DA)(DG)(DT)(DA)(DA)(DA)(DC)(DT)(DA)(DG)(DT) (DA)(DT)(DT)(DG)(DA)(DA)(DA)(DG)(DT)(DA)(DC)(DT)(DT)(DG)(DA)(DG)(DC)(DT)(DT) DNA template DNA synthetic construct 0.011942696 1 (DA)(DA)(DG)(DC)(DT)(DC)(DA)(DA)(DG)(DT)(DA)(DC)(DT)(DT)(DA)(DA)(DG)(DC)(DC)(DT) (DG)(DG)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DT)(DA)(DG)(DT)(DA)(DC)(DT)(DG)(DC)(DC) DNA RNA synthetic construct 0.006383837999999999 1 UAUCUGCAUGUAGACCAGGC ZINC ION 6.5409e-05 6 ZN singleParticle particle 7.8 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON III (4k x 4k) 88.28 1 NONE 3.9 FSC 0.143 CUT-OFF 61954 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_11842.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 272.256 272.256 272.256 90.0 90.0 90.0 X Y Z -0.23111773 0.37100738 0.00017518563 0.014608446 1.0635 1.0635 1.0635 0.06 AUTHOR ::::EMDATABANK.org::::EMD-11842::::