2024-07-10 REL PDBe PDBe PDBe 2020-10-12 2021-08-25 2021-08-25 2024-07-10 Biotechnology and Biological Sciences Research Council (BBSRC) BBS/E/J/000PR9794 United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) BB/L014130/1 United Kingdom John Innes Foundation None United Kingdom Nudaurelia capensis omega virus capsid: virus-like particles expressed in Nicotiana benthamiana Castells-Graells R Ribeiro JRS ICOSAHEDRAL VIRUS, AUTO-CATALYTIC CLEAVAGE, VIRUS MATURATION, TRANSIENT EXPRESSION, VIRUS LIKE PARTICLE Castells-Graells R Ribeiro JRS Domitrovic T Hesketh EL Scarff CA Johnson JE Ranson NA Lawson DM Lomonossoff GP Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus. Commun Biol UK 4 619 619 2021 34031522 doi:10.1038/s42003-021-02134-w 2399-3642 7anm FULLOVERLAP Nudaurelia capensis omega virus Nudaurelia capensis omega virus 0 1 2
The codon-optimized sequence was transiently expressed in Nicotiana benthamiana
Nudaurelia capensis omega virus Gonimbrasia cytherea 16.76 coat 420.0 4 VIRUS-LIKE PARTICLE OTHER false false p70 Nudaurelia capensis omega virus 0.062094828
There is an autocatalytic cleavage between Asn570 and Phe571. Terminal oxygen has been added to Asn570. There is an autocatalytic cleavage between Asn570 and Phe571. Terminal oxygen has been added to Asn570.
4 Nicotiana benthamiana LEVO MDSNSASGKRRSRNVRIAANTVNVAPKQRQARGRRARSRANNIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARG KLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMF RTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRL TYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPD STTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTT SAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNP GFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATR LTGVYGATDN Q4TVS9 p70 Nudaurelia capensis omega virus 0.007815101999999999
There is an autocatalytic cleavage between Asn570 and Phe571. Terminal oxygen has been added to Asn570. There is an autocatalytic cleavage between Asn570 and Phe571. Terminal oxygen has been added to Asn570.
4 Nicotiana benthamiana LEVO FAAAVLAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLPGLLASIPGKIAARVRARRDRRRAARMNNN Q4TVS9 singleParticle particle 0.3 5.0 COPPER GLOW DISCHARGE ETHANE FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.8 3.0 75000.0 NITROGEN FEI FALCON III (4k x 4k) INTEGRATING 1 2788 1.5 79.5 1 1OHF I 2.72 FSC 0.143 CUT-OFF RELION 2.1 21395 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD RELION 2.1 RELION 2.1 emd_11830.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 639.00006 639.00006 639.00006 90.0 90.0 90.0 X Y Z -0.254742 0.35927644 -0.000044038294 0.021197114 1.065 1.065 1.065 0.06 AUTHOR Postprocessed map from Relion 1OHF PDB experimental model OTHER Correlation coefficient REAL 18.899999999999999 emd_11830_msk_1.map emd_11830_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 639.00006 639.00006 639.00006 90.0 90.0 90.0 X Y Z -0.038573097 0.066490576 -0.000043821845 0.0052878303 1.065 1.065 1.065 AUTHOR Refine3D half map 2 from Relion emd_11830_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 639.00006 639.00006 639.00006 90.0 90.0 90.0 X Y Z -0.034492187 0.06617618 -0.000044254746 0.0053046932 1.065 1.065 1.065 AUTHOR Refine3D half map 1 from Relion