<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1183" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-12-05</deposition>
         <header_release>2005-12-05</header_release>
         <map_release>2005-12-05</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>Structural and functional insights into the interaction of echoviruses and decay-accelerating factor.</title>
      <authors_list>
         <author>Pettigrew DM</author>
         <author>Williams DT</author>
         <author>Kerrigan D</author>
         <author>Evans DJ</author>
         <author>Lea SM</author>
         <author>Bhella D</author>
      </authors_list>
      <keywords>
         </keywords>
      <replace_existing_entry>true</replace_existing_entry>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Pettigrew DM</author>
               <author order="2">Williams DT</author>
               <author order="3">Kerrigan D</author>
               <author order="4">Evans DJ</author>
               <author order="5">Lea SM</author>
               <author order="6">Bhella D</author>
               <title>Structural and functional insights into the interaction of echoviruses and decay-accelerating factor.</title>
               <journal>J.BIOL.CHEM.</journal>
               <volume>281</volume>
               <first_page>5169</first_page>
               <last_page>5177</last_page>
               <year>2006</year>
               <external_references type="PUBMED">16272562</external_references>
               <external_references type="DOI">doi:10.1074/jbc.M510362200</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>2c8i</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Echovirus type 12</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Echovirus type 12</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="EV12">Human echovirus 12</name>
            <sci_species_name ncbi="35293">Human echovirus 12</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>VP1-4</name>
               <diameter units="&#8491;">300</diameter>
               <triangulation>3</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>EV12</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.2</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>Phosphate buffered saline</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>5 microlitres of sample was loaded onto a
        quantifoil       grid       and then floated on a 20 microlitre
        droplet of       15% Ammonium       Molybdate for 10 seconds,
        then       the grid       was blotted for 2 seconds       before
        vitrification       in       liquid ethane.</details>
               </staining>
               <grid>
                  <details>400 mesh R2/2 quantifoils</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <method>Blot for two seconds, wait for two seconds.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1200</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_cs units="mm">3.4</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.8</nominal_defocus_max>
               <nominal_magnification>30000.0</nominal_magnification>
               <calibrated_magnification>29100.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">100</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective astigmatism corrected at 200,000
        times mag</astigmatism>
                  </legacy>
               </alignment_procedure>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>NIKON COOLSCAN</scanner>
                        <sampling_interval units="&#181;m">6.35</sampling_interval>
                     </digitization_details>
                     <number_real_images>84</number_real_images>
                     <details>Scanned on Nikon Coolscan</details>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry liquid-nitrogen cooled</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>defocus pairs, each particle - CTFmix</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">14.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>PFT2 and EM3DR2</name>
                  </software>
               </software_list>
               <number_images_used>1501</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="64772">
      <file>emd_1183.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>255</col>
         <row>255</row>
         <sec>255</sec>
      </dimensions>
      <origin>
         <col>-127</col>
         <row>-127</row>
         <sec>-127</sec>
      </origin>
      <spacing>
         <x>255</x>
         <y>255</y>
         <z>255</z>
      </spacing>
      <cell>
         <a units="&#8491;">555.9</a>
         <b units="&#8491;">555.9</b>
         <c units="&#8491;">555.9</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-239.683999999999997</minimum>
         <maximum>445.577999999999975</maximum>
         <average>6.39581</average>
         <std>58.9574</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.18</x>
         <y units="&#8491;">2.18</y>
         <z units="&#8491;">2.18</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>148.0</level>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of Echovirus type 12</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1183::::</details>
   </map>
</emd>