2024-11-06 REL PDBe PDBe PDBe 2020-09-30 2021-05-19 2021-05-19 2024-11-06 European Research Council (ERC) 724425-BENDER Netherlands H2020 Marie Curie Actions of the European Commission 792575 Netherlands H2020 Marie Curie Actions of the European Commission 842333 Netherlands European Molecular Biology Organization (EMBO) ALTF-948-2017 Netherlands European Molecular Biology Organization (EMBO) ALTF-1172-2018 Netherlands Structure of the SARS-CoV-2 spike glycoprotein in complex with the 47D11 neutralizing antibody Fab fragment Fedry J Hurdiss DL SARS-coV-2, spike, neutralizing antibody, VIRAL PROTEIN Fedry J Hurdiss DL Wang C Li W Obal G Drulyte I Du W Howes SC van Kuppeveld FJM Forster F Bosch BJ Structural insights into the cross-neutralization of SARS-CoV and SARS-CoV-2 by the human monoclonal antibody 47D11. Sci Adv US 7 2021 33958322 doi:10.1126/sciadv.abf5632 2375-2548 7akd FULLOVERLAP Complex of the SARS-CoV-2 spike glycoprotein with the 47D11 neutralizing antibody Fab fragment Complex of the SARS-CoV-2 spike glycoprotein with the 47D11 neutralizing antibody Fab fragment 0 1 2 3 Homo sapiens 0.55 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.141680594 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL QELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGGSAGGSAGWSHPQFEKGGGSGGGGSGGSAWS HPQFEK P0DTC2 47D11 neutralizing antibody heavy chain Homo sapiens 0.013205811999999999 2 Homo sapiens LEVO QVQLQESGPGLVKPSETLSLTCSVSGGSISSHYWSWIRQPPGKGLEWIGYIYYSGSTNHNPSLKSRVTISVDTSKNQFSL KLSSVTAADTAVYYCARGVLLWFGEPIFEIWGQGTMVTVSS 47D11 neutralizing antibody light chain Homo sapiens 0.011350606999999999 2 Homo sapiens LEVO EIVMTQSPATLSVSPGERATLSCRASQSVSSSLAWYQQKPGQAPRLLIYGASTRAPGIPARFSGSGSGTEFTLTISSLQS EDFAVYYCQQYNNWPLTFGGGTKVEI 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 28 NAG alpha-L-fucopyranose 0.000164156 3 FUC alpha-D-mannopyranose 0.000180156 2 MAN singleParticle particle 1.6 8.0 Quantifoil R1.2/1.3 COPPER GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 30.0 2.7 0.5 2.5 130000.0 OTHER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 4231 40.0 1 1500537 EMD-21457 4.0 FSC 0.143 CUT-OFF RELION 945232 RANDOM ASSIGNMENT RELION MAXIMUM LIKELIHOOD RELION emd_11812.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.08785352 0.14764456 0.000067191955 0.002204097 1.08 1.08 1.08 0.016 AUTHOR complex formed by the neutralising Fab 47D11 and the SARS-coV2 Spike glycoprotein