REL PDBe PDBe PDBe 2005-11-04 2005-11-04 2005-11-07 2012-10-24 Structure of the dodecahedral penton particle from human adenovirus type 3. Fuschiotti P Schoehn G Fender P Fabry CMS Hewat EA Chroboczek J Fuschiotti P Schoehn G Fender P Fabry CM Hewat EA Chroboczek J Ruigrok RW Conway JF Structure of the dodecahedral penton particle from human adenovirus type 3. J.MOL.BIOL. 356 510 520 2006 16375921 doi:10.1016/j.jmb.2005.11.048 adenovirus 3 penton dodecahedron adenovirus 3 penton dodecahedron
The pentons were expressed in baculovirus and the penton self-assemble into dodecahedrons
12 pentameric penton base and 12 trimeric fiber 2 4.5 Ad3 penton base Human adenovirus 3 human adenovirus 3 60 60 12 penton base true unidentified baculovirus pAcUW31 Ad3 fiber Human adenovirus 3 human adenovirus 3 0.035 36 12 trimers true bacculovirus pAcUW31 singleParticle particle 1 6.6
25 mM phosphate buffer at pH 6.6
 NEGATIVE
Quantifoil R2 1 grids (Quantifoil Micro Tools GmbH, Germany) were loaded with 4 ul of sample at 1 mg ml, blotted and rapidly frozen in liquid ethane within a liquid nitrogen bath using a Zeiss cryoplunger
Quantifoil R2/1 grids
 ETHANE 100 OTHER
Vitrification instrument: Zeiss cryoplunger
 FEI/PHILIPS CM200T OTHER BRIGHT FIELD LAB6 200 2 1.0 3.0 38000.0 40700.0 GATAN LIQUID NITROGEN 98 objective lens astigmatism was corrected at 100,000 times magnification KODAK SO-163 FILM ZEISS SCAI 7 12
6 focus pairs
 Eucentric
The particles were selected using X3d
each negative or each focal pair
 I OTHER 16.5 FSC 0.33 CUT-OFF PFT EM3DR PFT2 EM3DR2 1071 emd_1179.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 255 255 255 -127 -127 -127 255 255 255 438.6 438.6 438.6 90.0 90.0 90.0 X Y Z -357.0 348.0 2.10371828 44.685005189999998 1.72 1.72 1.72 79.0 AUTHOR The pixel size has been calibrated using the X-ray structure of adenovirus 2 penton base. Accession number 1X9P
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