2024-04-24 REL PDBe PDBe PDBe 2020-09-19 2021-07-07 2021-07-07 2024-04-24 Ministry of Economy and Competitiveness (MINECO) CTQ2017-82222-R Spain European Commission PCIG14-GA-2013-632072 Spain Bacterial 30S ribosomal subunit assembly complex state I (head domain) Schedlbauer A Iturrioz I Cryo-EM, 30S biogenesis, ribosome assembly, RbfA, RsgA, YjeQ, RimP, KsgA, RsmA, RIBOSOME Schedlbauer A Iturrioz I Ochoa-Lizarralde B Diercks T Lopez-Alonso JP Lavin JL Kaminishi T Capuni R Dhimole N de Astigarraga E Gil-Carton D Fucini P Connell SR A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv US 7 2021 34088665 doi:10.1126/sciadv.abf7547 2375-2548 7af5 FULLOVERLAP Bacterial 30S ribosomal subunit assembly complex state I (head domain) Bacterial 30S ribosomal subunit assembly complex state I (head domain) 0 1 2 3 4 5 6 7 8 9
30S head from multibody refinement
Escherichia coli 16SrRNA (head domain of the 30S ribosome) Escherichia coli 0.49952824999999995 1 AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGA AGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGA AACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUG GGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGA ACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGC CGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUU GACGUUACCCGCAGAAGAAGCACCGGCUAACUCCG(PSU)GCCAGCAGCC(G7M)CGGUAAUACGGAGGGUGCAAGCGUU AAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACU GCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGA GGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGA UACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUA AGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGU GGUUUAAUUCGAU(2MG)(5MC)AACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUG UGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACG AGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUG GGGAUGACGUCAAGUCAUCAUG(2MG)CCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCG ACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAA UCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGCCUUGUACACACCG(4OC)CCGU(5MC)ACACCA UGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAA GUCG(UR3)AACAAGGUAACCGUAGG(2MG)G(MA6)(MA6)CCUGCGGUUGGAUCACCUCCUUA 30S ribosomal protein S2 Escherichia coli 0.026781669999999997 1 Escherichia coli LEVO MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAV KDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEA E C3TPN2 30S ribosomal protein S3 Escherichia coli 0.026031316 1 Escherichia coli LEVO MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKK GEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK C3SQX2 30S ribosomal protein S7 Escherichia coli 0.020055155999999998 1 Escherichia coli LEVO MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRWLSLR SFSHQAGASSKQPALGYLN A0A5Q2GFB5 30S ribosomal protein S9 Escherichia coli 0.01488627 1 Escherichia coli LEVO MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIR HGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR C3SRY2 30S ribosomal protein S10 Escherichia coli 0.011755597 1 Escherichia coli LEVO MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPT EKTVDALMRLDLAAGVDVQISLG C3SQT7 30S ribosomal protein S13 Escherichia coli 0.013128467 1 Escherichia coli LEVO MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRL MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK C3SR52 30S ribosomal protein S14 Escherichia coli 0.011606559999999998 1 Escherichia coli LEVO MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLS RIKVREAAMRGEIPGLKKASW C3SR07 30S ribosomal protein S19 Escherichia coli 0.010455355 1 Escherichia coli LEVO MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTY RGHAADKKAKKK C3SQW2 MAGNESIUM ION 2.4305e-05 52 MG ZINC ION 6.5409e-05 1 ZN singleParticle particle 7.8 Quantifoil R2/2 CARBON CONTINUOUS ETHANE 100 277 FEI VITROBOT MARK III FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 38.8 1 231521
Relion initial model
 C1 2.96 FSC 0.143 CUT-OFF RELION 3.0 35171 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 RELION 3.0 emd_11753.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 419.99997 419.99997 419.99997 90.0 90.0 90.0 X Y Z -0.021837039 0.07705047 -0.00016219032 0.0018264538 1.05 1.05 1.05 0.014 AUTHOR Multibody refinement map for 30S ribosome (head domain) 4YBB PDB experimental model BACKBONE TRACE REAL emd_11753_msk_1.map emd_11753_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 419.99997 419.99997 419.99997 90.0 90.0 90.0 X Y Z -0.046334673 0.10944767 -0.00015785937 0.0042120004 1.05 1.05 1.05 AUTHOR Multibody refinement half map 2 for 30S ribosome (head domain) emd_11753_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 419.99997 419.99997 419.99997 90.0 90.0 90.0 X Y Z -0.04819964 0.10179189 -0.0001556093 0.0042201327 1.05 1.05 1.05 AUTHOR Multibody refinement half map 1 for 30S ribosome (head domain)