2026-09-02
REL
PDBe
INITIAL_RELEASE
REPOSITORY
INITIAL_RELEASE
REPOSITORY
EXPERIMENTAL_SUMMARY
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REMEDIATION
REPOSITORY
Metalloprotein remediation
STRUCTURE_SUMMARY
em_admin
pdbx_modification_feature
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PDBe
PDBe
2020-08-16
2020-10-28
2020-10-28
2026-09-02
French National Research Agency
ANR-16-CE11-0024-02
France
European Research Council (ERC)
759120
Assembly intermediate of the plant mitochondrial complex I
Soufari H
Waltz F
Hashem Y
Respiration, Complex I, mitochondria, plant, MEMBRANE PROTEIN
Soufari H
Parrot C
Kuhn L
Waltz F
Hashem Y
Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM.
Nat Commun
UK
11
5195
5195
2020
33060577
doi:10.1038/s41467-020-18814-w
2041-1723
EMD-11614
other EM volume
Mature complex
7a24
FULLOVERLAP
EMDB
EMD-11614
other EM volume
Mature complex
EMDB
EMD-11615
associated EM volume
Assembly intermediate of the plant mitochondrial complex I
Plant mitochondrial respiratory complex I assembly intermediate in presence of GLDH
Plant mitochondrial respiratory complex I assembly intermediate in presence of GLDH
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
Brassica oleracea
Flower
Mitochondria
51kDa
Brassica oleracea
0.053522417999999995
1
LEVO
MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAM
KRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHK
LLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLE
GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLK
ELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHE
SCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERE
LLQAAA
Nad2m
Brassica oleracea
0.055486836
1
LEVO
MKAEFVRILPHMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNVGWLGLLSVLITLLLLAAGAPLLTIAH
LFWNNLFRRDNFTYFCQIFLLLSTAGTISMCFDFFDQERFDAFEFIVLILLSTCGMLFMISAYDLIAMYLAIELQSLCFY
VIAASKRKSEFSTEAGLKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFK
ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLA
YSSIGHVGYICIGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAG
IPPLAGFCSKFYLFFAALGCGAYFLALVGVVTSVIGCFYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMTSFFITLFL
LYPSPLFSVTHQMALSLYL
Nad3m
Brassica oleracea
0.013941387
1
LEVO
MMLEFAPIFIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEVTFFFP
WAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE
Nad6m
Brassica oleracea
0.023700422
1
LEVO
MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVVMMFHIQIAEIH
EEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILL
VAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTIMRRTTDPLTIY
Nad1m
Brassica oleracea
0.036049086
1
LEVO
MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVA
TFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLI
CVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMS
GLCTLFFLGGWLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSLAWVVSVSGLLVT
FQWLP
Nad4Lm
Brassica oleracea
0.011139468999999999
1
LEVO
MDLIKYFTFSMIIFILGIWGILLNRRNILIMLMSIELMLLAVNSNFLVFSVSLDDMMGQVFALLVLTVAAAESAIGLAIF
VITFRVRGTIAVEFINSIQG
PGIV
Brassica oleracea
0.011985953999999998
1
LEVO
MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQKEMDDYVG
CMYYYTNEFDLCRKEQEAFEKVCPLK
B16.6
Brassica oleracea
0.016145584
1
LEVO
MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVGQGNKIRRALKEEKYA
ARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKVGENVYNSGRWMPPATGELRPDVW
MWFE
Brassica oleracea
0.0073496279999999995
1
LEVO
MSLVWLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPSS
B9
Brassica oleracea
0.006810177
1
LEVO
MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVTGKKQS
B14.5a
Brassica oleracea
0.015060061999999999
1
LEVO
MAKSVSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVPSSDPETVYNIVYHGRDQRRN
RPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEEDLDTRGGGYEK
B14.5b
Brassica oleracea
0.009220748999999999
1
LEVO
MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDLDVMLAKARAANERRYFDEDR
D
15kDa
Brassica oleracea
0.009914132999999999
1
LEVO
MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKGEETGDGTH
THH
Nad7m
Brassica oleracea
0.045020801
1
LEVO
MTTRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMMAQEH
AYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASFIRP
GGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYD
VYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGF
SVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR
75kDa
Brassica oleracea
0.081619367
1
LEVO
MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDAIEVFVDG
YAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVME
FLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGIL
GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVSDAVGSNIRVDSRGPEVMRIIPRLN
EDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVSWRDALAVVGDIIHQVKPDEIVGVAGQLSDAESMMVLKDFV
NRMGSDNVWCEGTAAGVDADLRYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNY
DCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIAQANNVVRPDWNGLNFLLQYAAQA
AALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFTQQT
VPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVE
NFYMTNSITRASKIMAQCSAVLLKKPFV
39kDa
Brassica oleracea
0.043988652
1
LEVO
MQVVSRRLVQRPLVGGASIYSSSSLRSLYGVSNHLNGTDNCRYSSSLATKGVGHLARKGTGGRSSVSGIVATVFGATGFL
GRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKAVMAKANVVINLIGREYETRNFSFEDAN
HHIAEKLALVAKEHGGIMRYIQVSCLGASVSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKY
GFLPLIGGGTTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIREWPRYVKLPFPIAKAMAA
PRDFMVNKVPFPLPSPQIFNLDQINALTTDTLVSDNALKFQDLDLVPHKLKGYPVEFLIQYRKGGPNFGSTVSEKIPTDF
YP
Nad9m
Brassica oleracea
0.02291091
1
LEVO
MDNQFIFKYSWETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLST
RYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVQVRYDDP
EKRVVSEPIEMTQEFRYFDFASPWEQRSDG
24kDa
Brassica oleracea
0.028423607
1
LEVO
MLARLAAKRLLEIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLA
QQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTK
DGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTL
LGEPKPPQFRDLDAC
18kDa
Brassica oleracea
0.017160445
1
LEVO
MALCATTQRTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVS
TLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPEN
13kDa
Brassica oleracea
0.012251121999999998
1
LEVO
MASNLLKALIRSQILPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISEVPPIKVDGRIVACEGDTNPAL
GHPIEFICLDLNEPAICKYCGLRYVQDHHH
B13
Brassica oleracea
0.019201905999999998
1
LEVO
MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWEMIEKR
LGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVIENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAA
TPSDPQLKE
B17.2
Brassica oleracea
0.018346736
1
LEVO
MALTVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYAS
KDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ
PSST
Brassica oleracea
0.024071949
1
LEVO
MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWAR
TGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWNK
TYKY
Brassica oleracea
0.025410662
1
LEVO
MASLLARRSFSALRARHLAFSGQGLQGSHLCGLQSRAISYGSNKDDEEAEQLAKEISKDWSTVFERSMNTLFLTEMVRGL
SLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMT
KCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR
B14
Brassica oleracea
0.015102261
1
LEVO
MAAPFALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDPKVIDLLIF
KGMEELTDIVDHAKQRHHIIGQYVVGEGLVQNTGNKDQGKTDFLKNFYTSNYF
MNLL
Brassica oleracea
0.011355008
1
LEVO
MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVTGGLIGLMGGFMYAYQN
SAGRLMGFFPNDGEVASYQKRGGFSK
B8
Brassica oleracea
0.010865765
1
LEVO
MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQMWARYDMGVERCVNLDGLTEP
QILKALENLVKSGATKA
ACPM1
Brassica oleracea
0.013735628
1
LEVO
MALRNAILRHLRVPVQTLGLNQSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSL
DTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMSS
Unk1
Brassica oleracea
0.001723883
1
LEVO
AAAAAAAAAAAAAAAAAAAAAAAA
P2
Brassica oleracea
0.01196552
1
LEVO
MATRNALRIVSRRFSSGKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAAGSASEAKVAGATASASAESGPKVSEDK
NRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE
CAL1
Brassica oleracea
0.027599747999999997
1
LEVO
MATSIARLSRRGVTSNLIRRCFAAEAALARKTELPKPQFTVSPSTDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVL
AGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQ
HSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLE
VEKFKKSLGIAV
CA1
Brassica oleracea
0.030010039
2
LEVO
MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAFVAPSASVIGDVHIGRGSSIW
YGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPTIIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKH
GMVAAGALVRQNTRIPSGEVWGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE
EYDSMLGIVRETPPELNLPNNILPDKETKRPSNVN
GLDH
Brassica oleracea
0.06865210899999999
1
LEVO
MLRSLLLRRSVGHSLGTLSPSSSTIRSSFSPHRTLCTTGQTLTPPPPPPPRPPPPPPATASEAQFRKYAGYAALAIFSGV
ATYFSFPFPENAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFNQPENLADLEALVKESHEKKLRIRPVGSGLSPNG
IGLSRSGMVNLALMDKVLEVDKEKKRVTVQAGIRVQQLVDAIKDYGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDE
QVISMKLVTPAKGTIELSREKDPELFHLARCGLGGLGVVAEVTLQCVARHELVEHTYVSNLQEIKKNHKKLLSANKHVKY
LYIPYTDTVVVVTCNPVSKWSGPPKDKPKYTTDEAVQHVRDLYRESIVKYRVQDSGKKSPDSSEPDIQELSFTELRDKLL
ALDPLNDVHVAKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSESCFPAGTLANPSMKDLEYIEELKKLIEKEAIP
APAPIEQRWTARSKSPISPAFSTSEDDIFSWVGIIMYLPTADPRQRKDITDEFFHYRHLTQKQLWDQFSAYEHWAKIEIP
KDKEELEALQARIRKRFPVDAYNKARRELDPNRILSNNMVEKLFPVSTTA
IRON/SULFUR CLUSTER
0.00035163999999999996
6
SF4
FLAVIN MONONUCLEOTIDE
0.00045634399999999997
1
FMN
Phosphatidylinositol
0.000887128
2
T7X
CARDIOLIPIN
0.0014640429999999997
1
CDL
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
0.0007200119999999999
1
PEV
FE2/S2 (INORGANIC) CLUSTER
0.00017581999999999998
2
FES
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
0.000745421
1
NDP
ZINC ION
6.5409e-05
2
ZN
BICARBONATE ION
6.1017e-05
1
BCT
singleParticle
particle
7.5
Quantifoil R2/2
COPPER
GLOW DISCHARGE
ETHANE
FEI TALOS ARCTICA
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
200
GATAN K2 SUMMIT (4k x 4k)
COUNTING
45.0
1
PHASE FLIPPING AND AMPLITUDE CORRECTION
3.8
FSC 0.143 CUT-OFF
RELION
3.0.8
36513
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD