2024-11-06 REL PDBe PDBe PDBe 2020-08-05 2021-07-28 2021-07-28 2024-11-06 Israel Science Foundation 569/17 Israel German-Israeli Foundation for Research and Development G-1483-207/2018 Israel Structure of high-light grown Chlorella ohadii photosystem I Caspy I Nelson N photosystem I, light stress, PHOTOSYNTHESIS Caspy I Neumann E Fadeeva M Liveanu V Savitsky A Frank A Kalisman YL Shkolnisky Y Murik O Treves H Hartmann V Nowaczyk MM Schuhmann W Rogner M Willner I Kaplan A Schuster G Nelson N Lubitz W Nechushtai R Cryo-EM photosystem I structure reveals adaptation mechanisms to extreme high light in Chlorella ohadii. Nat.Plants UK 7 1314 1322 2021 34462576 doi:10.1038/s41477-021-00983-1 2055-0278 6zzy FULLOVERLAP High light grown Chlorella ohadii photosystem I High light grown Chlorella ohadii photosystem I 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 Chlorella ohadii 1 Photosystem I P700 chlorophyll a apoprotein A1 Chlorella ohadii 0.082125898 1 LEVO KKVKIVVDRNPVATNFEKWAKPGHFSRTLSKGPTTTTWIWNLHADAHDFDTQTSDLEEISRKVFSAHFGQLGIIFIWLSG MYFHGARFSNYEAWLTDPTHIKPSAQVVWPIVGQEILNADVGGGFQGLQITSGFFQLWRAAGITSELQLYTTAIGALVMA AAMFFAGWFHYHKAAPKLEWFQNVESMLNHHLGGLLGLGSLAWAGHQIHVSLPINKLLDAGVDPKEIPLPHEFTLNPELM AQLYPSFSKGLAPFFTLDWAQYSDFLTFQGGLNPVTGGLWLTDTVHHHLAIAVLFLIAGHQYRTNWGIGSSLKEILEAHK GPFTGEGHKGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFCIVGAGAHAA IFMVRDYDPTNNYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWVQNT HFLAPGFTAPNALASTSPSWGGDVVAVGGKVAMMPISLGTADFLVHHIHAFTIHVTVLILLKGVLYARSSRLIPDKANLG FRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISIVIFHFSWKMQSDVWGTVSANGVSHITGGNFAQSANTINGWLRDFL WAQSSQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSITQGRAVGVAH YLLGGIATTWSFFLARILAVG W8SY74 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Chlorella ohadii 0.08154463299999999 1 LEVO KLFPKFSQALAQDPTTRRIWFGIATAHDFESHDGMTEERLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQDPL HIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNISTSGVYQWWYTIGLRTNQELYTGSIFLLVLAALFLFAGWLHLQPAFQ PALSWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLTVLPHPAGLTPFFTGNWAAYAENPDSASH VFNTAQGSGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVIFILAGHMYRTIFGIGHSMREILEAQTPPSGSLGAGHKGL YDTVNNSLHFQLGLALASVGTISSLVAQHMYSLPPYAFLAQDFTTQAALYTHHQYIAGFIMCGAFAHGAIFFVRDYDPAQ NRGNVLARILDHKEALISHLSWASLFLGFHTLGLYVHNDVVQAFGTPEKQILIEPVFAQWIQAAHGKTAYGFDFLLSSAT SAPSLAGQALWLPGWLQGINSDANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGP GRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNS LSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWRDKPVALSIVQARLVGLTHFSVGYVLTYA AFLIASTSGKF W8SUA3 1.97.1.12 Photosystem I iron-sulfur center Chlorella ohadii 0.008723009 1 LEVO SHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY W8SKM2 1.97.1.12 Photosystem I reaction center subunit chloroplastic Chlorella ohadii 0.015958232 1 LEVO AFTPPTLQSDTPSPIFGGSTGGLLSQAQVEEFHVITWESKKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALLTQLRTK FKIDGYIYRVFPNGEVQYLHPKDGVYPEKVNAGRSGDNTNMRRIGQNKEPVQIKFSGKIPAEF A0A2P6TKF8 Photosystem I reaction center subunit IV Chlorella ohadii 0.007194104999999999 1 LEVO PDVGPKRGTQVRILRPESYWFRETGKVVSVDQSGIRYPVVVRFEKVNYAGVSTNNYALDEVVAA A0A2P6U4S6 PSI-F Chlorella ohadii 0.018069886999999996 1 LEVO DVAGLTPCSESKAFAKRKKNEVKALNKRLKNYEADSAPALALKATIARTEARFDKYAKQGLLCGTDGLPHLIADPGLALR YGHAGDVFIPTIGFIYFAGWLGYAGSKYLQAVAATAKPIEKEIIIDVPLAWKLLWEGFGWPLRAFAEYKNGSLMEDDAKI TVSPR A0A2P6TPV8 Photosystem I reaction center subunit chloroplastic Chlorella ohadii 0.010326871999999999 1 LEVO LADVNLVVGGCTVGALALGRFVFLPFHRASLAKAGMPKQNGMTHLQAGDARAEEASFILKTNDPAGFTVVDVMAWGALGH AAAFYILATSSLGLDRNPF A0A2P6TZI8 Photosystem I reaction center subunit IX Chlorella ohadii 0.0044752920000000005 1 LEVO MKDFTTYLSTAPVLTLLSVTVVAGLLIEINRFFPDALIAAF W8SUD1 PSI-K Chlorella ohadii 0.008725087 1 LEVO YLGSTTNQIMVLSTFLPLVAGRFGLAPTSTRHTNQSGIKLLPAEKSAGLVSNDPAGFNAVDVLALGALGHILGCGIVLGL KSTGNL A0A2P6U0J1 Photosystem I reaction center subunit XII Chlorella ohadii 0.0033760599999999997 1 LEVO MPIADYQVFTALFLALATGIFAVRLGVALYK W8SU98 Photosystem I reaction center subunit VIII Chlorella ohadii 0.0038566739999999996 1 LEVO MSAQFLPSILVPLVGLVFPAVAMASMFLYIEKEEI W8SIP9 Photosystem I reaction center subunit VI-chloroplastic-like Chlorella ohadii 0.010319479 1 LEVO KYGEESRYFDLKDLENTVGSWDMYGQEDKSRYNGLQSEFFERAANGLSRREYILGLVAIGGAGILAWGGKGAADVRLPTV GPQQPAQVGPRGRL A0A2P6TPU7 PSI subunit V Chlorella ohadii 0.016501025 1 LEVO KVQVVQPVNGDPFIGMLETPVTSSPAIAWYLSNLPAYRTGVSPLLRGVEIGLAHGYLLVGPFIKLGPLRDVENVAEIVGC INGAATVLILTLCLAYGAVTFQGEGPQVGVKTLSGRSIPRDPLQSADGWNKFTAGFAVGGLSGAAWGYLCTQILPYY A0A2P6TC44 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.019933603999999997 2 LEVO KAGNWLPGSETPAYLENLPASYGFDPLGLAAEPASLARFRESEVFHGRWAMLGAAGVLGVEVLGYGNWYDAPLPLVQGGQ ATYFGASVPFDLGTLAAIEFAAMAGAESFRGAAEPEKRVYPGGAFDPMGMSKGNSKELKTKEIKNGRLAMLACLGFAAQH AATGASPLEALASHLANPMAVNFATNGVSLPL A0A2P6TT36 Glutathione reductase Chlorella ohadii 0.026163903999999998 1 LEVO EGADLAKVERVAKVGGLYKNFTSGQALSYLDGTLPGDFGFDPLGLCDPEGAGGFITPEWLSYSEVIHCRWAMLGAAGFLA PEILATAGLIPATPEEAVWFRSGVIPPAGQYGKYWMDPYSLFWIEAILMNFAELKRWQDFKEPGSQSKQYFLGLEAVFGG SGNPAYPGGQWFNMLNLGKTPEEMKKLQTNEIRNGRLAMIACLGCAAQGVMTQKGPFANLLEHLADPVSNNLLGNLATIL K A0A2P6TMT4 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.023010993999999996 1 LEVO AGWDLSAEVPAHLAGRKDLAGNYGFDPLNLGKNPEALKWYQQAELQNGRWAMLGVAGILVQELLHSTGLGGKAADVYWFD AGNNTFWAPKETLIAISFLMFNWAELNRMQDYIKPGSNVTDPFGNKIKYVELGYPGFDPLSFSKNNFDEWKLKEIKNARL AMLAFLGIVAQHNAQPGSPLEQLGAHLANPWKNHFINNGVSPFLTDN A0A2P6TQ14 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.025111686 1 LEVO QRKLWFPGVAAPGYLDGSMAGDRGFDPMGLGANPKMMTWYRQAELQNGRWAMLGVAGILGQEIINPAQWWYTAGMPENLP RFDSQPVNMGGILAWEFILMHFVEVRRWQDIRKKDSVNADPFNPNLKVPNPELGYPGGPFDPLGFSKGNFKEAQTKEIKN GRLAMVAFAAFTIQAQATGKGPLQNLTDHLSAPFSNNWTTNIGHCMVPTSVDVQGLTIPLSCLWPGQ A0A2P6U4K1 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.02531624 1 LEVO ARANWLPGSDFPAHLENCKLPGCYGFDPLGLGANEERLAWFAESERVHCRWAMLGVAGILVQEIVKPDVFWYTSGATVEL PFDITGLLAFELFVMHWVESRRGYDIKKPGSMDQDPIFSNFKLPAHEPGYPGGIFAPFVPGSLEELKVKEIKNGRLAMLA FIGFTMAAQVTGKNPLAALREHLDNPLGTTIFSKAVVVPGQAVVPPCAIPDTIEFQGITIPAGCFLHSLWP A0A2P6TPR7 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.024016155999999997 1 LEVO VRELWFPGNKEVVPDYLDGSLVGDHGFDPLGLGSSPEQLSWNVHAEIFHGRLAMTGVAGILLTSLLHKGGADVPEWFEAG RVYLDRNPNVDFGALLFSTIVMSGFVEFKRLNDIRNPGSQGSGILPEDFKGVGGPQGRTVGGPYVGGRYFDPMGLCRGSP EQTLKYKWNEIRNGRLAMMAFLGFAAQYAATGKGPIDNLVDHVADPFHTTFVHNGVSVPFI A0A2P6TS63 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.023612712999999997 1 LEVO ATRPLWQPGVEAPKHLDGTMPGDFGFDPLNLGVNKEALNWYRNAELQNGRWAMLGVAGIVIPAELTRVGVLNVPEWAEAG KVYAESENAIPFASLLMVQLFLFNFVEIKRWEDIKKPGSQAEPGSFLGFESGFKGTGISGYPGGAFNPFGLGNSSKEAMD DLKWREIRNGRLAMVAFLGFLSQHAATGKGPLDNLADHLADPWGANFCSNGVSIPSALG A0A2P6TZ50 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.023618 1 LEVO RPTWYPGATPPKYLDGTMLGDYGFDPLRLGSKDKDVLKYYREGELTNGRWAMAAVAGILFTDLVGLGPWWEAGAKVESSF DLKTLIIIEVVTFAILEGFRVKAYEKTGETGLGPFAPFDPLNMRSDETRLKELKNGRLAMLAFLGFSSQAAVQGKGPIEC LQAHLADPGHNNIFTSSVGNEALAAVLVLSITPCLIEAKNRLQGTDEEEFRPLPW A0A2P6TMX4 Chlorophyll a-b binding protein, chloroplastic Chlorella ohadii 0.019779574 1 LEVO TLWLPGIQAPKYLDGKLAGDYGFDPLGLGVDSDRLKWYAEAEKTNGRWAMAAVAGILFTEILGKAKWFEAGAQEYWMDNG PLLAVEAVIMGFLELKRFQGWKETGTSGFLNAFPFDPAGMNSPSMATKEVKNGRLAMTAFVGFAVQALLTRQGPIEALQS HLSSPFTNNFVGSINNLPNVIG A0A2P6TMI2 CHLOROPHYLL A ISOMER 0.000893489 1 CL0 CHLOROPHYLL A 0.000893489 227 CLA PHYLLOQUINONE 0.000450696 2 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 BETA-CAROTENE 0.000536873 32 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 24 LHG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 3 DGD 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 1 3PH DODECYL-BETA-D-MALTOSIDE 0.000510615 4 LMT 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007871209999999999 2 PCW PHOSPHATIDYLETHANOLAMINE 0.0007340389999999999 6 PTY [2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM 0.00044053199999999994 3 LAP 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 3 SQD ERGOSTEROL 0.000396648 1 ERG (3R)-beta,beta-caroten-3-ol 0.0005528719999999999 1 RRX (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate 0.00045355 2 LPX beta,beta-caroten-4-one 0.000550856 1 ECH (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 22 LUT CHLOROPHYLL B 0.000907472 24 CHL OLEIC ACID 0.000282461 2 OLA (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one 0.000260414 2 QTB 2-(2-azanylethanoylamino)ethanoic acid 0.000132118 1 GG0 PALMITIC ACID 0.00025642399999999994 2 PLM DIACYL GLYCEROL 0.000625018 2 DGA SPHINGOSINE 0.000299492 1 SPH (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 1 XAT (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol 0.000568871 1 C7Z Tripalmitoylglycerol 0.00080732 3 4RF O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 0.000792075 1 P5S (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid 0.00026431699999999997 1 A8S singleParticle particle 3 8.0 Quantifoil R1.2/1.3 COPPER 300 GLOW DISCHARGE ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.9 2.0 165000.0 GATAN K3 BIOQUANTUM (6k x 4k) 10280 46.04 1 401966 6IJO 3.16 FSC 0.143 CUT-OFF RELION 75049 ANGULAR RECONSTITUTION RELION ANGULAR RECONSTITUTION RELION emd_11589.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 414.72 414.72 414.72 90.0 90.0 90.0 X Y Z -0.040632363 0.082399614 0.000048717975 0.0036871477 0.81 0.81 0.81 0.007 AUTHOR 6IJO PDB experimental model RIGID BODY FIT REAL