2024-05-01 REL PDBe PDBe PDBe 2020-07-24 2020-09-09 2020-09-09 2024-05-01 German Research Foundation (DFG) Germany Howard Hughes Medical Institute (HHMI) United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) United States Best KM Denk T translation, frameshifting, collision, RIBOSOME Sinha NK Ordureau A Best K Saba JA Zinshteyn B Sundaramoorthy E Fulzele A Garshott DM Denk T Thoms M Paulo JA Harper W Bennett EJ Beckmann R Green R Elife US 9 2020 32744497 doi:10.7554/eLife.58828 2050-084X 6zvi FULLOVERLAP Mbf1-ribosome complex Mbf1-ribosome complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 Saccharomyces cerevisiae A/P-site tRNA Saccharomyces cerevisiae 0.024501539 1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUAGGAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA P/E-site tRNA Saccharomyces cerevisiae 0.024802784999999997 1 CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA mRNA Saccharomyces cerevisiae 0.010947275999999999 1 UUUUUUUUUUUUGACAAAUUUUUUUUUUAAACUGG 18S rRNA Saccharomyces cerevisiae 0.5663134379999999 1 UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUUUAUACA GUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAUUUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUC UAGAGCUAAUACAUGCUUAAAAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCU UUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAAAUUUCUGCCCUAUCAACUUU CGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAACGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAA ACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACG AUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAUUGGAGGGCAAGUCU GGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUU GGGCCCGGUUGGCCGGUCGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACCA GGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUAUUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGA CGUUUGGUUCUAUUUUGUUGGUUUCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUC AGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUUUCAUUAAUCAAGAACGA AAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUU UUUAAUGACCCACUCGGCACCUUACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUA AAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCAGGUCCA GACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUUGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAG UGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACU UCUUAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCC GCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGC UGGGGAUAGAGCAUUGUAAUUAUUGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGU CCCUGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGGAUCUGCAGAGCGGAGAA UUUGGACAAACUUGGUCAUUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA 40S ribosomal protein S0-A Saccharomyces cerevisiae 0.022811074 1 LEVO SLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTF GQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIP CNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDP P32905 RPS1A isoform 1 Saccharomyces cerevisiae 0.024498365 1 LEVO VVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTN FHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGS TLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEG A0A6A5PRY4 RPS2 isoform 1 Saccharomyces cerevisiae 0.023212978999999998 1 LEVO GWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGL GIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGV EDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSDEASAQ A0A6A5PWF7 RPS3 isoform 1 Saccharomyces cerevisiae 0.024702790999999998 1 LEVO ALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPG TIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQ PVNDFIDTATRHVLMRQGVLGIKVKIMRDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDY A0A6A5Q3Q1 40S ribosomal protein S4-A Saccharomyces cerevisiae 0.029338133 1 LEVO ARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTT YPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVK IDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKG KGIKLSIAEERDRRRAQQGL P0CX35 Rps5p Saccharomyces cerevisiae 0.022908338 1 LEVO FTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMM NGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGA REAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR A0A1L4AA68 40S ribosomal protein S6-A Saccharomyces cerevisiae 0.024965974999999998 1 LEVO MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN VSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR EVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSE P0CX37 40S ribosomal protein S7-A Saccharomyces cerevisiae 0.021071569999999998 1 LEVO APQAKILSQAPTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELE KKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQI DYKLESFQAVYNKLTGKQIVFEIPS P26786 40S ribosomal protein S8-A Saccharomyces cerevisiae 0.022406609 1 LEVO GISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGV VYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFS AGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK P0CX39 40S ribosomal protein S9-A Saccharomyces cerevisiae 0.021210661999999998 1 LEVO PRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLV RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT SPFGGARPGRVARRNAARKAEASGE O13516 40S ribosomal protein S10-A Saccharomyces cerevisiae 0.011042561999999999 1 LEVO MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYL NLPEHIVPGTYI Q08745 40S ribosomal protein S11-A Saccharomyces cerevisiae 0.016588461 1 LEVO STELTVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMH RTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG P0CX47 RPS12 isoform 1 Saccharomyces cerevisiae 0.013327331 1 LEVO AEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGE WAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEHFSQQ A0A6A5Q8I3 40S ribosomal protein S13 Saccharomyces cerevisiae 0.016928748 1 LEVO GRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLA PEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN P05756 RPS15 isoform 1 Saccharomyces cerevisiae 0.013421731999999999 1 LEVO THSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSV VGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG A0A6A5Q6F2 40S ribosomal protein S16-A Saccharomyces cerevisiae 0.015659216 1 LEVO AVPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIR QAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR P0CX51 40S ribosomal protein S17-A Saccharomyces cerevisiae 0.014268544999999999 1 LEVO GRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERK DQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSA P02407 40S ribosomal protein S18-A Saccharomyces cerevisiae 0.016940443 1 LEVO SLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI PAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA P0CX55 40S ribosomal protein S19-A Saccharomyces cerevisiae 0.01581093 1 LEVO PGVSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYG GAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEEDE P07280 RPS20 isoform 1 Saccharomyces cerevisiae 0.011476479 1 LEVO IIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQ IVKRITQITIEPGVDVEVVVA A0A6A5PVE9 40S ribosomal protein S21-A Saccharomyces cerevisiae 0.009758829 1 LEVO MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLLK NVWSYSR P0C0V8 RPS22A isoform 1 Saccharomyces cerevisiae 0.014518867 1 LEVO TRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNV KIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY A0A6A5PSE9 40S ribosomal protein S23-A Saccharomyces cerevisiae 0.015942699 1 LEVO GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGK KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS P0CX29 40S ribosomal protein S24-A Saccharomyces cerevisiae 0.01523165 1 LEVO SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAE AKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD P0CX31 RPS25A isoform 1 Saccharomyces cerevisiae 0.007930299 1 LEVO QHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT A0A6A5PZ18 40S ribosomal protein S27-A Saccharomyces cerevisiae 0.008762194999999999 1 LEVO VLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRR K P35997 RPS28A isoform 1 Saccharomyces cerevisiae 0.0071162809999999995 1 LEVO TPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESEREARRLR A0A6A5Q700 40S ribosomal protein S30-A Saccharomyces cerevisiae 0.005267314 1 LEVO AKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNV P0CX33 RPS31 isoform 1 Saccharomyces cerevisiae 0.008329946 1 LEVO RKKKVYTTPKKIKHKHKAVKLAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVNA A0A6A5PU37 Guanine nucleotide-binding protein subunit beta-like protein Saccharomyces cerevisiae 0.034151426 1 LEVO LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEAADDDS VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN P38011 MBF1 isoform 1 Saccharomyces cerevisiae 0.012423186999999999 1 LEVO RSQGQINAARRQGLVVSVDKKYGSTNTRGDNEGQRLTKVDRETDIVKPKKLDPNVGRAISRARTDKKMSQKDLATKINEK PTVVNDYEAARAIPNQQVLSKLERALGVKLR A0A6A5Q7X0 RPS29A isoform 1 Saccharomyces cerevisiae 0.006335303 1 LEVO ENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR A0A6A5PV92 40S ribosomal protein S14-B Saccharomyces cerevisiae 0.013560527999999999 1 LEVO NSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGT RTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL P39516 RPS26B isoform 1 Saccharomyces cerevisiae 0.011022988999999999 1 LEVO PKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA RIVRVRSREDRKNRAPP A0A6A5Q0E8 ZINC ION 6.5409e-05 2 ZN singleParticle particle 7.5 ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 28.0 1 3.0 FSC 0.143 CUT-OFF 57350 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_11457_msk_1.map emd_11457_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.6 423.6 423.6 90.0 90.0 90.0 X Y Z -0.03905249 0.13813142 0.00053422316 0.004297135 1.059 1.059 1.059 AUTHOR ::::EMDATABANK.org::::EMD-11457:::: Post processed map, bFactor -30 emd_11457_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.6 423.6 423.6 90.0 90.0 90.0 X Y Z -0.022888612 0.08549292 0.0008262387 0.006460143 1.059 1.059 1.059 AUTHOR ::::EMDATABANK.org::::EMD-11457:::: Half map 1 of the 3D refinement emd_11457_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 423.6 423.6 423.6 90.0 90.0 90.0 X Y Z -0.024022117 0.088480845 0.00083353376 0.0064643333 1.059 1.059 1.059 AUTHOR ::::EMDATABANK.org::::EMD-11457:::: Half map 2 of the 3D refinement