<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1138" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-07-27</deposition>
         <header_release>2005-07-27</header_release>
         <map_release>2006-07-27</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES.</title>
      <authors_list>
         <author>Boehringer D</author>
         <author>Thermann R</author>
         <author>Ostareck-Lederer A</author>
         <author>Lewis JD</author>
         <author>Stark H</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Boehringer D</author>
               <author order="2">Thermann R</author>
               <author order="3">Ostareck-Lederer A</author>
               <author order="4">Lewis JD</author>
               <author order="5">Stark H</author>
               <title>Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES.</title>
               <journal>STRUCTURE</journal>
               <volume>13</volume>
               <first_page>1695</first_page>
               <last_page>1706</last_page>
               <year>2005</year>
               <external_references type="PUBMED">16271893</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2005.08.008</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>2agn</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>IRES-80S ribosome complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>IRES-80S ribosome complex</name>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
         <organelle_or_cellular_component_supramolecule supramolecule_id="1">
            <name>ribosome</name>
            <details>H. sapiens</details>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>human</synonym_organism>
               <cell>HeLa</cell>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
         </organelle_or_cellular_component_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <rna macromolecule_id="1">
            <name>HCV IRES</name>
            <natural_source database="NCBI">
               <organism ncbi="11103">Hepatitis C virus</organism>
            </natural_source>
            <classification>OTHER</classification>
            <structure>DOUBLE HELIX</structure>
            <synthetic_flag>true</synthetic_flag>
         </rna>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>8.1</ph>
                  <details>20 mM Tris.HCl pH 8.1, 145 mM KCl, 1 mM CaCl2,
          5       mM MgCl2,       0.2 mM DTT, 5 mM tobramycin</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>native cryo</details>
               </staining>
               <grid>
                  <details>copper grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200FEG</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">2.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">KODAK SO-163 FILM</film_or_detector_model>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">15.0</resolution>
               <resolution_method>FSC 3 SIGMA CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>imagic 5</name>
                  </software>
               </software_list>
               <number_images_used>24100</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_1138.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">460.8</a>
         <b units="&#8491;">460.8</b>
         <c units="&#8491;">460.8</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.423707</minimum>
         <maximum>0.541096</maximum>
         <average>-0.000000000004334</average>
         <std>0.0509359</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.6</x>
         <y units="&#8491;">3.6</y>
         <z units="&#8491;">3.6</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0521</level>
         </contour>
      </contour_list>
      <annotation_details>Cryo-EM map of the hepatitis C virus internal
      ribosome entry site in complex with human 80S ribosome</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1138::::</details>
   </map>
</emd>