2020-12-30 REL PDBe PDBe PDBe 2020-07-13 2020-11-18 2020-11-18 2020-12-30 German Research Foundation (DFG) Germany Max Planck Society Germany European Research Council (ERC) European Union TwistTower_native-twist Kube M Kohler F Feigl E Nagel-Yuksel B Willner EM Funke JJ Gerling T Stommer P Honemann MN Martin TG Scheres SHW Dietz H Kube M Kohler F Feigl E Nagel-Yuksel B Willner EM Funke JJ Gerling T Stommer P Honemann MN Martin TG Scheres SHW Dietz H Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution. Nat Commun UK 11 6229 6229 2020 33277481 doi:10.1038/s41467-020-20020-7 2041-1723 EMD-10993 other EM volume EMD-11159 other EM volume EMD-11168 other EM volume EMD-11170 other EM volume EMD-11294 other EM volume EMD-11295 other EM volume EMD-11296 other EM volume EMD-11297 other EM volume EMD-11298 other EM volume EMD-11346 other EM volume EMD-11348 other EM volume EMD-11349 other EM volume EMD-11350 other EM volume EMD-11351 other EM volume EMD-11352 other EM volume EMD-11353 other EM volume EMD-11354 other EM volume EMD-11343 other EM volume EMD-11344 other EM volume EMD-11345 other EM volume EMD-11367 other EM volume EMD-11355 other EM volume EMD-11378 other EM volume EMD-11379 associated EM volume TwistTower_native-twist TwistTower_native-twist 0
multilayer DNA origami object consisting of 4 parts with crossections of 2x2, 4x4, 6x6, and 8x8 helices arranged on a square lattice. Native crossover spacing corresponding to 10.66bp/turn
synthetic construct synthetic construct singleParticle particle 8.0 C-flat-2/1 COPPER 400 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 293 FEI VITROBOT MARK IV
monodisperse, 5 datasets: 1.5uM, 1.0uM, 2.3uM, 2.0uM, 1.75uM
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.01 0.2605 3.692 47000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN CEOS Cs corrector FEI FALCON III (4k x 4k) INTEGRATING 4096 4096 21279 55.0
magnified pixel size 1.39 A
 1 CTFFIND 4.1 C1 7.4 FSC 0.143 CUT-OFF RELION 2 RELION 3
Resolution of individual parts (Multibody Refinement): 2x2: 7.8 A, 4x4: 6.5 A, 6x6: 6.8 A, 8.8: 7.1 A
509812 OTHER RELION 2 RELION 3
maximum a posteriori (MAP), REgularized LIkelihood OptimizatioN (Relion)
 OTHER RELION 2 RELION 3
maximum a posteriori (MAP), REgularized LIkelihood OptimizatioN (Relion)
 emd_11379.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 464 464 464 0 0 0 464 464 464 644.96 644.96 644.96 90.0 90.0 90.0 X Y Z -0.2165063 0.40101093 0.00082956726 0.017301481 1.3900001 1.3900001 1.3900001 0.051 AUTHOR multilayer DNA origami object consisting of 4 parts with crossections of 2x2, 4x4, 6x6, and 8x8 helices arranged on a square lattice. Native crossover spacing corresponding to 10.66bp/turn emd_11379_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.04748682 0.19512339 0.0024202033 0.014261954 1.39 1.39 1.39 AUTHOR 8x8 subpart from Multibody Refinement emd_11379_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.049903605 0.1879706 0.0012996059 0.0117437905 1.39 1.39 1.39 AUTHOR 6x6 subpart from Multibody Refinement emd_11379_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.06347431 0.21874474 0.00037000986 0.00934599 1.39 1.39 1.39 AUTHOR 4x4 subpart from Multibody Refinement emd_11379_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.14638704 0.34885296 0.00032579686 0.0064266683 1.39 1.39 1.39 AUTHOR 2x2 subpart from Multibody Refinement emd_11379_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 513 541 -4 -37 -26 512 513 541 711.68 713.07 751.99 90.0 90.0 90.0 X Y Z -0.0095950905 0.32137662 0.0016073199 0.009384879 1.39 1.39 1.39 AUTHOR Composite map from the four parts, obtained from Relion Multibody Refinement