2022-12-21 REL PDBe PDBe PDBe 2020-07-08 2020-07-29 2020-07-29 2022-12-21 Spanish National Research Council PIE/COVID-19 number 202020E079 Spain Spanish Ministry of Science, Innovation, and Universities SEV 2017-0712 Spain European Research Council (ERC) ERC - 2018 - SyG, Proposal: 810057 European Union National Institutes of Health/National Library of Medicine (NIH/NLM) GM125769 United States National Institutes of Health/National Library of Medicine (NIH/NLM) R01-AI127521 United States SARS-CoV-2 stabilized spike in prefusion state (1-up conformation) Martinez M Marabini R Carazo JM Melero R Sorzano COS Foster B Vilas JL Martinez M Marabini R Ramirez-Aportela E Sanchez-Garcia R Herreros D Del Cano L Losana P Fonseca-Reyna YC Conesa P Wrapp D Chacon P McLellan JS Tagare HD Carazo JM Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures. Iucrj UK 7 1059 1069 2020 33063791 doi:10.1107/S2052252520012725 2052-2525 Melero R Sorzano COS Foster B Vilas JL Martinez M Marabini R Ramirez-Aportela E Sanchez-Garcia R Herreros D Del Cano L Losana P Fonseca-Reyna YC Conesa P Wrapp D Chacon P McLellan JS Tagare HD Carazo JM Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures. Biorxiv US 2020 32676604 doi:10.1101/2020.07.08.191072 2692-8205 EMD-11328 other EM volume EMD-11341 associated EM volume Spike homotrimer in prefusion state (1-up stabilized conformation) Spike homotrimer in prefusion state (1-up stabilized conformation) 0 1 Severe acute respiratory syndrome coronavirus 2 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 45.0 1 2.9 FSC 0.143 CUT-OFF 126000 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION RELION emd_11341.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.67978966 2.0712452 -0.00036611938 0.038307056 1.0469999 1.0469999 1.0469999 0.115 AUTHOR emd_11341_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.09661135 8.670541 0.0010040682 0.07526408 1.0469999 1.0469999 1.0469999 AUTHOR Sharpened map with LocalDeblur emd_11341_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.031059058 1.2364337 0.00051460735 0.011765281 1.0469999 1.0469999 1.0469999 AUTHOR Sharpened map with DeepEMhancer emd_11341_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.9769139 2.3031378 0.0006622713 0.08566628 1.0469999 1.0469999 1.0469999 AUTHOR emd_11341_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.81784856 2.282319 0.0006803507 0.085641816 1.0469999 1.0469999 1.0469999 AUTHOR