2024-10-23 REL PDBe PDBe PDBe 2020-07-08 2020-07-29 2020-07-29 2024-10-23 Spanish National Research Council PIE/COVID-19 202020E079 Spain Spanish Ministry of Science, Innovation, and Universities SEV 2017-0712 Spain European Research Council (ERC) ERC - 2018 - SyG, Proposal: 810057 Spain National Institutes of Health/National Library of Medicine (NIH/NLM) GM125769 United States National Institutes of Health/National Library of Medicine (NIH/NLM) R01-AI127521 United States SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation) Martinez M Marabini R Spike, Prefusion, Flexibility, Closed, VIRAL PROTEIN Melero R Sorzano COS Foster B Vilas JL Martinez M Marabini R Ramirez-Aportela E Sanchez-Garcia R Herreros D Del Cano L Losana P Fonseca-Reyna YC Conesa P Wrapp D Chacon P McLellan JS Tagare HD Carazo JM Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures. Iucrj UK 7 1059 1069 2020 33063791 doi:10.1107/S2052252520012725 2052-2525 Melero R Sorzano COS Foster B Vilas JL Martinez M Marabini R Ramirez-Aportela E Sanchez-Garcia R Herreros D Del Cano L Losana P Fonseca-Reyna YC Conesa P Wrapp D Chacon P McLellan JS Tagare HD Carazo JM Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures. Biorxiv US 2020 32676604 doi:10.1101/2020.07.08.191072 2692-8205 EMD-11328 other EM volume 6zp5 FULLOVERLAP SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation) SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation) 0 1 Severe acute respiratory syndrome coronavirus 2 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.142399375 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL QELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSA WSHPQFEK P0DTC2 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 18 NAG alpha-D-mannopyranose 0.000180156 2 MAN DIMETHYL SULFOXIDE 7.813299999999999e-05 3 DMS singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 36.0 1 1 3.1 FSC 0.143 CUT-OFF 45000 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION 2 30000.0 RELION emd_11336.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -0.6210032 1.6552871 -0.0004252622 0.034511767 1.0469999 1.0469999 1.0469999 0.2 AUTHOR 6ZOW PDB experimental model FLEXIBLE FIT
Atomic structure 6ZOW was flexibly fitted to the map.
 emd_11336_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -1.442971 2.001756 0.00052384345 0.13883434 1.0469999 1.0469999 1.0469999 AUTHOR emd_11336_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 0 0 0 432 432 432 452.30396 452.30396 452.30396 90.0 90.0 90.0 X Y Z -1.4898669 2.311409 0.0005213055 0.13890521 1.0469999 1.0469999 1.0469999 AUTHOR