2025-04-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY COORDINATE_REPLACEMENT AUTHOR Sequence discrepancy STRUCTURE_SUMMARY atom_site atom_site_anisotrop chem_comp citation em_entity_assembly em_software entity entity_name_com entity_poly entity_poly_seq entity_src_nat pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_conn_angle pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral pdbx_validate_close_contact pdbx_validate_rmsd_angle pdbx_validate_rmsd_bond pdbx_validate_torsion refine_ls_restr software struct_asym struct_conf struct_conn struct_mon_prot_cis struct_ref struct_ref_seq struct_ref_seq_dif struct_sheet_range _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.id _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type _citation.journal_volume _citation.page_first _citation.page_last _citation.title _em_entity_assembly.entity_id_list _em_software.category _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly_seq.mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _refine_ls_restr.dev_ideal _refine_ls_restr.number _software.version _struct_asym.entity_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_seq_id _struct_conf.end_label_comp_id _struct_conf.end_label_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.pdbx_PDB_helix_length _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.pdbx_omega_angle _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_label_comp_id STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification REFINEMENT_DESCRIPTION database_2 em_3d_fitting_list em_admin pdbx_initial_refinement_model _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update PDBe PDBe 2020-07-07 2021-06-16 2021-06-16 2025-04-09 Israel Science Foundation 569/17 Israel Israel Science Foundation 2716/17 Israel German-Israeli Foundation for Research and Development G-1483-207/2018 Israel European Research Council (ERC) 723991 Belgium Photosystem I reduced Plastocyanin Complex Nelson N Caspy I Photosystem I, membrane protein, PHOTOSYNTHESIS Caspy I Fadeeva M Kuhlgert S Borovikova-Sheinker A Klaiman D Masrati G Drepper F Ben-Tal N Hippler M Nelson N Structure of plant photosystem I-plastocyanin complex reveals strong hydrophobic interactions. Biochem.J. UK 478 2371 2384 2021 34085703 doi:10.1042/BCJ20210267 1470-8728 0043 BIJOAK 6zoo FULLOVERLAP Photosystem I plastocyanin complex Photosystem I plastocyanin complex 0 1 10 11 13 14 16 17 2 3 4 5 6 7 9 Pisum sativum 0.65 Photosystem I P700 chlorophyll a apoprotein A1 Pisum sativum 0.082717672 1 LEVO PEVKILVDRDPIKTSFEQWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSG MYFHGARFSNYEAWLNDPT(SNK)IRPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGA LVFAALMLFAGWFHYHKAAPKLVWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFILN RDLLAQLYPSFAEGATPFFTLNWSKYADFLTFRGGLDPLTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDIL EAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAA AHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQW IQNTHALAPGTTAPGATTSTSLTWGGGDLVSVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPD KANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSINDQGVVT(SNK)ITGGNFAQSSI TINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSI VQGRAVGVTHYLLGGIATTWAFFLARIIAVG A0A0F6NFW5 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Pisum sativum 0.082381734 1 LEVO ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEGRLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDP LHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGAIFLLFLSFISLLAGWLHLQPKW KPSVSWFKNAESRLNHHLSGLFGVSSLAWAGHLVHVAIPGSRGEYVRWNNFLSVLPHPQGLGPLFTGQWNLYAQNPDSSN HLFSTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIGGHMYRTNFGIGHSIKYILEAHIPPGGRLGRGHKG LYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPE QNADNVLARMLEHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSST NSPALNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDG PGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMN SLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFSVGYIFTY AAFLIASTSGKFG A0A0F6NGI2 1.97.1.12 Photosystem I iron-sulfur center Pisum sativum 0.008860276 1 LEVO SHSVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY P10793 1.97.1.12 PsaD Pisum sativum 0.016041408 1 LEVO GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSK YKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGVNFRSIGKNVSPIEVKFTGKQPYDL E1C9K8 Putative uncharacterized protein Pisum sativum 0.0074794219999999995 1 LEVO PPIGPKRGAKVKILRQESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK E1C9K6 Photosystem I reaction center subunit III Pisum sativum 0.017137857 1 LEVO DIAGLTPCKDSKQFAKREKQSIKKLESSLKLYAPDSAPALAINATIEKTKRRFDNYGKQGLLCGADGLPHLIVSGDQRHW GEFITPGILFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATGLVFRGFSWPIAAYRELLNGELVAKDV A0A0M3KL12 photosystem I reaction center Pisum sativum 0.010678027 1 LEVO LNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI VAYYILATSSNGYDPKF A0A0M3KL13 Photosystem I reaction center subunit VI,Photosystem I reaction center subunit VI Pisum sativum 0.010043313 1 LEVO YGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKK GPQLPPQLGPRLG Photosystem I reaction center subunit VIII Pisum sativum 0.0034091979999999996 1 LEVO INLPSLFVPLVGLLFPAVAMASLFLHVEKRL P17227 Photosystem I reaction center subunit IX Pisum sativum 0.004767609 1 LEVO MRDLKTYLSVAPVASTLWFAALAGLLIEINRFFPDALTFPFF D5MAL3 Photosystem I reaction center subunit X psaK Pisum sativum 0.008135471 1 LEVO FIGSPTNLIMVTSTSLMLFAGRFGLAPSANRKATAGLKLEARDSGLQTGDPAGFTLADTLACGVVGHIIGVGVVLGLKNI G E1C9L3 PsaL domain-containing protein Pisum sativum 0.01686327 1 LEVO YQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGPLRNTEIAGQAGSLA AGGLVVILSICLTIYGISSFNEGDPSTAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAFFLLYVLDLPYF Chlorophyll a-b binding protein 6, chloroplastic Pisum sativum 0.021335438999999998 1 LEVO DWMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQA TYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIC VQQSAYPGTGPLENLATHLADPWHNTIGNVLIP Q01667 Chlorophyll a-b binding protein, chloroplastic Pisum sativum 0.022845812 1 LEVO TVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSW YTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKEL RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA Q41038 Chlorophyll a-b binding protein 3, chloroplastic Pisum sativum 0.024139521 1 LEVO RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETAL AWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG KDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH Q32904 Chlorophyll a-b binding protein P4, chloroplastic Pisum sativum 0.021994029 1 LEVO KKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGK EEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLA MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL Q9SQL2 Plastocyanin, chloroplastic Pisum sativum 0.010353486999999998 1 LEVO VEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTY KFYCSPHQGAGMVGQVTVN P16002 CHLOROPHYLL A ISOMER 0.000893489 1 CL0 CHLOROPHYLL A 0.000893489 142 CLA PHYLLOQUINONE 0.000450696 2 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 BETA-CAROTENE 0.000536873 27 BCR 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 8 LHG DODECYL-BETA-D-MALTOSIDE 0.000510615 6 LMT 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 19 LMG CALCIUM ION 4.0078e-05 2 CA DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 7 DGD (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 8 LUT CHLOROPHYLL B 0.000907472 14 CHL (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 2 XAT 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 0.000704998 1 3PH COPPER (II) ION 6.354599999999999e-05 1 CU water 1.8015e-05 2 HOH singleParticle particle 2.8 7.0
20mM Mes-Tris, 10mM sodium ascorbate
 Quantifoil R1.2/1.3 COPPER 300 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 20.0 0.3 0.3 1.5 1.5 130000.0 NITROGEN GATAN K3 (6k x 4k) 6129 2.49 40.8 1 359977 6YEZ 4 C1 2.74 FSC 0.143 CUT-OFF RELION 3.0.7 104127 ANGULAR RECONSTITUTION RELION 3.0.7 ANGULAR RECONSTITUTION RELION 3.0.7 6 23000.0 RELION 3.0.7 emd_11326.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 392.4 392.4 392.4 90.0 90.0 90.0 X Y Z -0.07392658 0.17598514 0.00007799922 0.0053951577 1.308 1.308 1.308 0.0125 AUTHOR 6YEZ PDB experimental model RIGID BODY FIT REAL 38.799999999999997