2025-04-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY database_2 em_3d_fitting_list em_admin entity pdbx_initial_refinement_model _chem_comp.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _entity.pdbx_description DATABASE_REFERENCES citation _citation.journal_volume STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list em_admin entity pdbx_entity_nonpoly pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _chem_comp.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_entry_details.has_protein_modification PDBe PDBe 2020-06-30 2020-10-07 2020-10-07 2025-04-09 European Commission 665385 European Union European Commission 653706 European Union Kampjut D Sazanov LA complex, respiration, NADH, proton pump, mitochondria, iron-sulphur cluster, oxidoreductase, membrane protein, ELECTRON TRANSPORT Kampjut D Sazanov LA Science US 370 2020 32972993 doi:10.1126/science.abc4209 1095-9203 0038 SCIEAS 6zkb FULLOVERLAP Membrane domain of closed complex I during turnover Membrane domain of closed complex I during turnover 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 Ovis aries 1 Mitochondrial complex I, 49 kDa subunit Ovis aries 0.052017766 1 LEVO MAALRALRRLRGAAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQYGGAVMYPTKETAHWKPPPWNDVDPPKDTLVSNL TLNFGPGVLRLVMELSGEMVRKCDPHIGLLH(2MR)GTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ PPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMD DIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGS RGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEA PKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR NADH-ubiquinone oxidoreductase chain 5 Ovis aries 0.068438906 1 LEVO (FME)NLFSSLTLVTLILLTMPIAAINFNTHKFTNYPLYVKTTISCAFITSMIPTMMFIHTGQEMIISNWHWLTIQTLKL SLSFKMDFFSMMFVPVALFVTWSIMEFSMWYMHSDPNINQFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIG WWYGRTDANTAALQAILYNRIGDIGFILAMAWFLINLNTWDLQQIFMLNPNDSNLPLMGLILAATGKSAQFGLHPWLPSA MEGPTPVSALLHSSTMVVAGIFLLIRFYPLTENNKFGQSIMLCLGAMTTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVT IGINQPHLAFLHICTHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLFKAMPFTTTALIIGSLALTGMPFLTGFYSKDLII ESANTSYTNAWALLMTLVATSFTAIYSTRIIFFALLGQPRFPTLININENNPFLINSIKRLLIGSLFAGFIISNNIPPMT IPQMTMPHYLKMTALTVTILGFILALEISNTTHYLKFNYPSNTFKFSNLLGYYPTIMHRLTPYMNLTMSQKSASSLLDLI WLETILPKTISLAQMKMSTTITSQKGLIKLYFLSFLITILISTTLLNFHE O78756 7.1.1.2 NADH-ubiquinone oxidoreductase chain 4 Ovis aries 0.052086742 1 LEVO (FME)LKYIIPTMMLMPLTWLSKNSMIWINTTLHSLLISLTSLLLLNQFGDNSLNFSLTFFSDSLSTPLLILTMWLLPLM LMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFFYIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAG SLPLLVALIYIQNTMGSLNFLILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL KLGGYGMMRITLLLNPITDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALM IAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILM GLNMVITALYSLYMLITTQRGKHTHHINNILPSFTRENALMSLHMLPLLLLSLNPKIILGPLY O78755 7.1.1.2 NADH-ubiquinone oxidoreductase chain 2 Ovis aries 0.039149804999999996 1 LEVO MNPIILIIILMTVMLGTIIVMISTHWLLIWIGFEMNMLAIIPIMMKKHNPRATEASTKYFLTQSTASMLLMMAIIINLMF SGQWTVMKLFNPMASMLMTMALAMKLGMAPFHFWVPEVTQGIPLSSGLILLTWQKLAPMSVLYQILPSINLDLILTLSIL SITIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLLYNPTMTLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKAPIM TILVLITLLSMGGLPPLSGFMPKWMIIQEMTKNDSIILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFPTT KRMTLLPTMTVLSTMLLPLTPILSILE O78748 7.1.1.2 Mitochondrial complex I, B14.7 subunit Ovis aries 0.014784008999999999 1 LEVO M(AYA)KTLLHQYWDIPEGTECHRKTYAATSIGGASGLVVSAYSVALKTPTSFLEGVARTGRYTFTAAAIGAIFGLTSCI SAQVREKPDDPLNYLIGGCAGGLTLGARTRSYGIGAAACAYMGLTAALVKMGQLEGWKVFAEPKV W5PAR2 NADH:ubiquinone oxidoreductase subunit B5 Ovis aries 0.021614201 1 LEVO MAAMSLLHRASVSAVVALSGRRLGTRLGFGGFLTRDFPKTVAPVRHSGDHGKRLFIIKPSGFYDKRFLKLLRFYILLTGI PVVIGITLINVFIGEAELAEIPEGYVPEHWEYFKHPISRWIARTFFDAPEKNYERTMAILQIESEKAELRLKELEVRRLM RAKGDGPWFQYPTIDKALIDHSPKATPDN W5QHN8 Acyl carrier protein Ovis aries 0.017608199 1 LEVO VEVKDFYTTNYQTAVSFSPLGPMPSMALMAVSLSGANVPKSGGRPEESRVPVLTQRKVPGRVTPLCRQYSDAPPLTLEGI KDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE W5NQT7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Ovis aries 0.020139208999999998 1 LEVO MPGIVELPSLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAE PFTEYWTCIDYSGLQLFRRCRKEQAQFDKCVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRARPEPNPEVEGDLKP ARHGSRLFFWTM W5PYA5 Mitochondrial complex I, PDSW subunit Ovis aries 0.020880752 1 LEVO PDSWDKDVYPEPPRRTPAPSPQTSLPNPITYLTKAFDLLVDRPVTLVREFIERQHAKNKYYYYHREFRRVPDITECHEKD VLCMFEAEMQWKRDYKVDQEIVNIIQERLKACQQREGESHRQNCAKELQQFTQVVKAYQDRYHDLGAHYSARKCLAKQKQ RMLAERKATKEAAAA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial Ovis aries 0.040557148 1 LEVO MALRFLRLVPASAASRGLAAVPPRVGGIHTSVQRKLQYGPLAYILGEKTTKKMTENSKLITVDGNICSGK(SEP)KLAKE VAEKLGLKHFPEAGIHYADSTTGDGKPLPVRFSGNCSLEKFYDDPKSNDGNSYRLQAWLYASRLLQYADALEHLLSTGQG VVLERSIYSDFVFLEAMYRQGFIRKQCVDHYNQVKKVTVCEYLPPHVVIYVDVPVSEVQSRIQKKGNPHEMKITSAYLQD IENVYKGTFLPEMSEKCEVLQYSAWEAEDAEKVVEDIQYLKYDKGPWLDQDDRKLHNLRMLVQDKLEVLNYTSIPVFLPE VTIGAHQSDRVFQEFTELPGRKYRAGYNEDVGDKWIWLK W5QBF5 NADH:ubiquinone oxidoreductase subunit S5 Ovis aries 0.012605593999999998 1 LEVO MPFFDVQKKLGVDLDHWMTIQSAEQPHRIPARCHAFEKEWIECAHGIGSIRAEKECKIEFEDFRECLLRQKTMKRLNAIK RQRDKLIKEGKYTPPPHHSGQEDLRP W5QFF9 NADH:ubiquinone oxidoreductase subunit A3 Ovis aries 0.009325851 1 LEVO MAPRVAAFLKNVWAKEPVLVASFAIAGLAVILPTLSPYTKYSLMINRATPYNYPVPLRDDGNMPDVPSHPQDPQGPSLEW LKRL W5NYM7 NADH:ubiquinone oxidoreductase subunit B3 Ovis aries 0.011146679 1 LEVO MAHGHGHEHGPSKMELPDYKQWKIEGTPLETVQEKLAARGLRDPWGRNEAWRYMGGFANNVSFVGALLKGFKWGFAAFVV AVGAEYYLESQKKDKKHH W5Q5T4 NADH dehydrogenase [ubiquinone] 1 subunit C2 Ovis aries 0.014431655 1 LEVO VTMMTGRQARAPLQFLPDEARSLPPPKLTDPRLAYIGFLGYCSGLIDNAIRRRPVLSAGLHRQFLYITSFVFVGYYLLKR QDYMYAVRDHDMFSYIKSHPEDFPEKDKKTYREVFEEFHPVR W5P9Q8 NADH:ubiquinone oxidoreductase subunit B4 Ovis aries 0.015236375 1 LEVO KMSFPKYEPSRLASLPTTLDPAEYDISSETRKAQAERLAIRSRLKREYQLQYNDPSRRGVVEDPALIRWTCARSANVYPN FRPNTKTSLLGALFGIGPLIFWYYVFKTDRDRKEKLIQEGKLDRTFNISY W5QF73 Mitochondrial complex I, B16.6 subunit Ovis aries 0.016766461 1 LEVO MAASKVKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMRWNRERRRLQIEDFEARIALMPLLQAEKD RRVLQMLRENLEEEATIMKDVPGWKVGESVFHTTRWVTPMMGELYGLRTGEEILSSTYGFIWYT Mitochondrial complex I, B17 subunit Ovis aries 0.015565126 1 LEVO MSGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPRRVSPVERFWNKFLQDGALWKNVIYKTYRHSIFAFTHVLIPVW IIHYYLKYHVTTKPYTIVEKKPRIFPGDTILETGEVIPPMKEFPDQHH W5PZE3 NADH:ubiquinone oxidoreductase subunit B7 Ovis aries 0.016413807 1 LEVO MGAHLARRYLGDASVEPEPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLVLQQRDYCAHYLIRFLKCKRDSFPNFLAC KHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREADMAKGLGPGEVAPEVAL W5P5V3 NADH:ubiquinone oxidoreductase subunit B9 Ovis aries 0.02177991 1 LEVO MAFLPSAAYLTHQQKVLQLYKRALRHLESRCVHRDKYRYFACLLRARFDEHKNEKDMVKATQLLREAEKEFWHGQHPQPY IFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETPVGGPRTEALPPARKQ GDLPPLWWHIVTRPRERPM W5PGA3 NADH:ubiquinone oxidoreductase subunit B2 Ovis aries 0.01222677 1 LEVO MAGMSALKRLAPFAHVGGHLFRGRCARAVGAGGVRRAGGGAHIEPRYRQFPQLTRSQVIQAEFFSATMWFWILWRFWHDS DAVLGHFPYPDPSQWTDEELGIPPDDED W5PVD7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial Ovis aries 0.021752602 1 LEVO MAAARAGVLGIRWLQKAARNVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPD RSQQERDPWYDWDHPDLRLNWGEPMHWDLDMYIRNRVDTSPTPVNWNLMCKHLFGFVAFMLFMFWVGETYPTYQPVGPKQ YPYNNLYLERGGDPNKEPEPVVHYEI W5Q1B0 Mitochondrial complex I, ESSS subunit Ovis aries 0.017410659999999998 1 LEVO MAAGMLGLCGRRLLAVAATRGLPAASVRWESSSSRAVIAPSTLAGKRPSEPTLRWQEDPEPEDENLYEKNPDSHGYDKDP AVDVWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREAHGLPLMESNCFDPSKIQLPEDED W5PWF1 Mitochondrial complex I, KFYI subunit Ovis aries 0.008802174000000001 1 LEVO MAPSAFLRPFWKLLAPARFPSVSSSRSKFYIQEPPHGSPNWLKVGLTLGTSAFLWIYLIKQHNEDVLEYKRRNGLE Mitochondrial complex I, MNLL subunit Ovis aries 0.007075305 1 LEVO MMNLLQVVRDHWIHVLVPVGFVFGYYLDRKNDEKLAAFRNKSLLYKRELKPQEEVTWK Mitochondrial complex I, MWFE subunit Ovis aries 0.008211519 1 LEVO MWFEVLPGIAVMGVCLFIPGMATARIHRFSNGGREKRVAHYSYQWYLMERDRRVSGVNRYYVSKGLENID NADH-ubiquinone oxidoreductase chain 3 Ovis aries 0.01310652 1 LEVO MNLMITLLTNFTLATLLVTIAFWLPQLNVYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ TTNLNTMLTMALLLIFLLAVSLAYEWTQKGLEWTE O78753 7.1.1.2 NADH-ubiquinone oxidoreductase chain 1 Ovis aries 0.035884902 1 LEVO MFMINVLTLIIPILLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSISMFILAPILALT LALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF TLSTLIITQEQVWLIFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNIFTTT LFLGAFHNPYMPELYTINFTIKSLLLSITFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPILLSSIPPQT O78747 7.1.1.2 NADH-ubiquinone oxidoreductase chain 6 Ovis aries 0.019126618999999997 1 LEVO MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMMVVFGYTTAMATEQYP EVWVSNKVVLGTFITGLLMEFLMVYYVLKDKEVEIVFKFNGMGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWS LLIGVVVIMEITRGN O78757 7.1.1.2 NADH-ubiquinone oxidoreductase chain 4L Ovis aries 0.010868237 1 LEVO (FME)SLVYMNIMMAFTVSLTGLLMYRSHLMSSLLCLEGMMLSLFILATLMILNSHFTLASMMPIILLVFAACEAALGLS LLVMVSNTYGTDYVQNLNLLQC O78754 7.1.1.2 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 11 3PE 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007901449999999999 4 PC1 CARDIOLIPIN 0.0014640429999999997 7 CDL S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate 0.000568704 1 ZMP ADENOSINE MONOPHOSPHATE 0.000347221 1 AMP MYRISTIC ACID 0.000228371 1 MYR water 1.8015e-05 446 HOH singleParticle particle 3 7.4 ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 FEI FALCON III (4k x 4k) INTEGRATING 100.0 1 5LNK C1 2.9 FSC 0.143 CUT-OFF RELION 3.0 29057 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 5LNK PDB experimental model FLEXIBLE FIT Correlation coefficient REAL 50.0