<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1124" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-04-27</deposition>
         <header_release>2005-04-27</header_release>
         <map_release>2005-12-21</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35.</title>
      <authors_list>
         <author>Laurinmaki PA</author>
         <author>Huiskonen JT</author>
         <author>Bamford DH</author>
         <author>Butcher SJ</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Laurinmaki PA</author>
               <author order="2">Huiskonen JT</author>
               <author order="3">Bamford DH</author>
               <author order="4">Butcher SJ</author>
               <title>Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35.</title>
               <journal>STRUCTURE</journal>
               <volume>13</volume>
               <first_page>1819</first_page>
               <last_page>1828</last_page>
               <year>2005</year>
               <external_references type="PUBMED">16338410</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2005.08.020</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Bam35c empty virion</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Bam35c empty virion</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="Bam35c">Bam35</name>
            <sci_species_name>Bam35</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="1428">Bacillus thuringiensis</organism>
               <synonym_organism>BACTERIA(EUBACTERIA)</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>Outer layer</name>
               <diameter units="&#8491;">650</diameter>
               <triangulation>25</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>true</virus_enveloped>
            <virus_empty>true</virus_empty>
            <syn_species_name>Bam35c</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">3.0</concentration>
               <buffer>
                  <ph>7.2</ph>
                  <details>10mM KPO4</details>
               </buffer>
               <grid>
                  <details>400 mesh copper grid, Quantifoil R2/2 holey</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">90</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: EMBL design</details>
                  <method>A small vial of ethane is placed inside a         larger
        liquid       nitrogen reservoir. The grid holding 3
        microliters of the sample       is held in place at the bottom
        of a plunger by the means of fine       tweezers. When the
        liquid ethane is ready, a piece of filter       paper       is
        then pressed against the sample to blot off excess       buffer,
        sufficient to leave a thin layer on the grid. The       filter
        is       removed, and the plunger is allowed to       drop into
        the       liquid ethane. Once the grid enters the       liquid
        ethane, the sample       is rapidly frozen, and the       grid
        is       transferred under liquid       nitrogen       to a
        storage       box immersed in liquid nitrogen for       later
        use in       the microscope.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">1.7</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>49300.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">90</temperature_min>
                  <temperature_max units="K">94</temperature_max>
                  <temperature_average units="K">93</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>objective lens astigmatism was corrected at 50,000</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>Low Dose Conditions</details>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7.0</sampling_interval>
                     </digitization_details>
                     <number_real_images>32</number_real_images>
                     <bits_per_pixel>12.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry liquid nitrogen-cooled cryo specimen holder</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles selected using program ETHAN and windowed
          manually in EMAN. Only particles without DNA were selected.</details>
            <ctf_correction>
               <details>Each particle, wiener factor 0.1</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">18.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EM3DR2, P3DR</name>
                  </software>
               </software_list>
               <number_images_used>379</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="67049">
      <file>emd_1124.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS SIGNED INTEGER (2 BYTES)</data_type>
      <dimensions>
         <col>325</col>
         <row>325</row>
         <sec>325</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>325</x>
         <y>325</y>
         <z>325</z>
      </spacing>
      <cell>
         <a units="&#8491;">923</a>
         <b units="&#8491;">923</b>
         <c units="&#8491;">923</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-3595.0</minimum>
         <maximum>6170.0</maximum>
         <average>0.272464</average>
         <std>679.730000000000018</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.84</x>
         <y units="&#8491;">2.84</y>
         <z units="&#8491;">2.84</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1380.0</level>
         </contour>
      </contour_list>
      <annotation_details>Bam35 empty virion</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1124::::</details>
   </map>
</emd>