<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1123" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-04-27</deposition>
         <header_release>2005-04-27</header_release>
         <map_release>2005-12-21</map_release>
         <update>2012-10-24</update>
      </key_dates>
      <title>Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35.</title>
      <authors_list>
         <author>Laurinmaki PA</author>
         <author>Huiskonen JT</author>
         <author>Bamford DH</author>
         <author>Butcher SJ</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Laurinmaki PA</author>
               <author order="2">Huiskonen JT</author>
               <author order="3">Bamford DH</author>
               <author order="4">Butcher SJ</author>
               <title>Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35.</title>
               <journal>STRUCTURE</journal>
               <volume>13</volume>
               <first_page>1819</first_page>
               <last_page>1828</last_page>
               <year>2005</year>
               <external_references type="PUBMED">16338410</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2005.08.020</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Bam35c virion</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Bam35c virion</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="Bam35c">Bacillus phage Bam35</name>
            <sci_species_name ncbi="341938">Bacillus phage Bam35</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="1428">Bacillus thuringiensis</organism>
               <synonym_organism>BACTERIA(EUBACTERIA)</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>Outer layer</name>
               <diameter units="&#8491;">650</diameter>
               <triangulation>25</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>true</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>Bam35c</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">3.0</concentration>
               <buffer>
                  <ph>7.2</ph>
                  <details>10mM KPO4</details>
               </buffer>
               <grid>
                  <details>400 mesh copper grid, Quantifoil R2/2 holey</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">90</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: EMBL design</details>
                  <method>A small vial of ethane is placed inside a larger liquid
        nitrogen reservoir. The grid holding 3 microliters of the sample
        is held in place at the bottom of a plunger by the means of fine
        tweezers. When the liquid ethane is ready, a piece of filter
        paper       is then pressed against the sample to blot off
        excess buffer,       sufficient to leave a thin layer on the
        grid. The filter paper is       removed, and the plunger is
        allowed to drop into the liquid       ethane. Once the grid
        enters the liquid ethane, the sample is       rapidly frozen,
        and the grid is transferred under liquid nitrogen       to a
        storage box immersed in liquid nitrogen for later use in the microscope.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">1.9</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>49300.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">90</temperature_min>
                  <temperature_max units="K">94</temperature_max>
                  <temperature_average units="K">93</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>objective lens astigmatism was corrected at 50,000</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>Low Dose Conditions</details>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7.0</sampling_interval>
                     </digitization_details>
                     <number_real_images>69</number_real_images>
                     <bits_per_pixel>12.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry liquid nitrogen-cooled cryo specimen holder</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles selected using program ETHAN and windowed
          manually in EMAN. Only particles with DNA were selected.</details>
            <ctf_correction>
               <details>Each particle, wiener factor 0.1</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.4</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EM3DR2, P3DR</name>
                  </software>
               </software_list>
               <number_images_used>4474</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="411417">
      <file>emd_1123.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS SIGNED INTEGER (2 BYTES)</data_type>
      <dimensions>
         <col>595</col>
         <row>595</row>
         <sec>595</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>595</x>
         <y>595</y>
         <z>595</z>
      </spacing>
      <cell>
         <a units="&#8491;">844.9</a>
         <b units="&#8491;">844.9</b>
         <c units="&#8491;">844.9</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2798.0</minimum>
         <maximum>4683.0</maximum>
         <average>0.0980345</average>
         <std>679.715000000000032</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.42</x>
         <y units="&#8491;">1.42</y>
         <z units="&#8491;">1.42</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1430.0</level>
         </contour>
      </contour_list>
      <annotation_details>Bam35 virion</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1123::::</details>
   </map>
</emd>