<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1114" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-03-29</deposition>
         <header_release>2005-03-29</header_release>
         <map_release>2005-10-04</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>The crystal structure of coxsackievirus A21 and its interaction with ICAM-1.</title>
      <authors_list>
         <author>Xiao C</author>
         <author>Bator-Kelly CM</author>
         <author>Rieder E</author>
         <author>Chipman PR</author>
         <author>Craig A</author>
         <author>Kuhn RJ</author>
         <author>Wimmer E</author>
         <author>Rossmann MG</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Xiao C</author>
               <author order="2">Bator-Kelly CM</author>
               <author order="3">Rieder E</author>
               <author order="4">Chipman PR</author>
               <author order="5">Craig A</author>
               <author order="6">Kuhn RJ</author>
               <author order="7">Wimmer E</author>
               <author order="8">Rossmann MG</author>
               <title>The crystal structure of coxsackievirus A21 and its interaction with ICAM-1.</title>
               <journal>STRUCTURE</journal>
               <volume>13</volume>
               <first_page>1019</first_page>
               <last_page>1033</last_page>
               <year>2005</year>
               <external_references type="PUBMED">16004874</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2005.04.011</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>1z7z</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Human Coxsackievirus A21 complex with ICAM-1KilifiFc</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Human Coxsackievirus A21 complex with ICAM-1KilifiFc</name>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">11</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="CVA21">Human coxsackievirus A21</name>
            <details>CVA21 has 60 ICAM-1Kilifi bound on its surface</details>
            <sci_species_name ncbi="12069">Human coxsackievirus A21</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <molecular_weight>
               <experimental units="MDa">8</experimental>
            </molecular_weight>
            <virus_shell shell_id="1">
               <name>capsid</name>
               <diameter units="&#8491;">130</diameter>
               <triangulation>1</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>CVA21</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="ICAM-1Kilifi">ICAM-1KilifiFc</name>
            <natural_source database="NCBI">
               <organism>
                  </organism>
               <cell>COS7</cell>
               <cellular_location>cell membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.05</experimental>
            </molecular_weight>
            <details>60 ICAM-1Kilifi bound to one virus</details>
            <number_of_copies>60</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>COS7</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">5.0</concentration>
               <buffer>
                  <ph>7.2</ph>
                  <details>200mM NaCl, 10mM Tris-HCL</details>
               </buffer>
               <grid>
                  <details>200 mesh gold grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">80</chamber_temperature>
                  <instrument>REICHERT-JUNG PLUNGER</instrument>
                  <details>Vitrification instrument: Reichert plunger</details>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM300FEG/T</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.7</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
               <nominal_magnification>45000.0</nominal_magnification>
               <calibrated_magnification>47000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">80</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <electron_beam_tilt_params>0</electron_beam_tilt_params>
                  </legacy>
               </alignment_procedure>
               <date>2001-03-15</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">2.98</sampling_interval>
                     </digitization_details>
                     <number_real_images>33</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">30</average_electron_dose_per_image>
                     <details>7um step scanned and averaged to 14um</details>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Side entry liquid nitrogen-cooled cryo specimen holder</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>7979 particles were manually boxed by using RobEM</details>
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">8.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>parallelized EMPFT, EM3DR</name>
                  </software>
               </software_list>
               <number_images_used>4704</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="199473">
      <file>emd_1114.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>371</col>
         <row>371</row>
         <sec>371</sec>
      </dimensions>
      <origin>
         <col>-185</col>
         <row>-185</row>
         <sec>-185</sec>
      </origin>
      <spacing>
         <x>371</x>
         <y>371</y>
         <z>371</z>
      </spacing>
      <cell>
         <a units="&#8491;">742</a>
         <b units="&#8491;">742</b>
         <c units="&#8491;">742</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>Y</fast>
         <medium>X</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-396.970000000000027</minimum>
         <maximum>512.799999999999955</maximum>
         <average>-1.83118</average>
         <std>51.307299999999998</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2</x>
         <y units="&#8491;">2</y>
         <z units="&#8491;">2</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>101.0</level>
         </contour>
      </contour_list>
      <annotation_details>This is an cryo-EM reconstructed map of human
      coxsackievirus A21 complex with 5 domain ICAM-1kilifi</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1114::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>1IAM</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>EMFIT</name>
               </software>
            </software_list>
            <details>Protocol: Rigid Body. The domains were separately fitted.</details>
            <target_criteria>Sumf</target_criteria>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>