Pre-fusion conformation of glycoprotein B of Herpes simplex virus 1

2024-11-13 REL PDBe PDBe PDBe 2020-06-04 2020-10-07 2020-10-07 2024-11-13 German Research Foundation (DFG) INST 152/772-1, 774-1, 775-1, 776-1 FUGG Germany Wellcome Trust 209250/Z/17/Z, 107806/Z/15/Z, 203815/Z/16/A, 203141/Z/16/Z United Kingdom Medical Research Council (MRC, United Kingdom) MR/M019292/1, MR/R017875/1 United Kingdom Marie Sklodowska-Curie Actions, FragNET ITN KGBVIFEF European Union Pre-fusion conformation of glycoprotein B of Herpes simplex virus 1 Vollmer B Prazak V Membrane fusion protein, glycoprotein, gB, UL27, viral entry protein, class III fusion protein, transmembrane protein, pre-fusion conformation, VIRAL PROTEIN Vollmer B Prazak V Vasishtan D Jefferys EE Hernandez-Duran A Vallbracht M Klupp BG Mettenleiter TC Backovic M Rey FA Topf M Grunewald K The prefusion structure of herpes simplex virus glycoprotein B. Sci Adv US 6 2020 32978151 doi:10.1126/sciadv.abc1726 2375-2548 EMD-3362 other EM volume

Wildtype version of the same protein

6z9m FULLOVERLAP Human alphaherpesvirus 1 Human alphaherpesvirus 1 0 1

Protein recombinantly expressed in membrane protein enriched extracellular vesicles (MPEEVs)

Human alphaherpesvirus 1 Homo sapiens 0.3 VIRUS-LIKE PARTICLE OTHER true true Envelope glycoprotein B Human herpesvirus 1 0.10038330499999999 3 Mesocricetus auratus LEVO MHQGAPSWGRRWFVVWALLGLTLGVLVASAAPSSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTP PRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFK ATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAA TRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFK QVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLT EYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPT PPPPGASANASVERIKTTSSIEFARLQFTYNHIQRPVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVS ARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRY FTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADID TVIHADANAAMFAGLGAFFEGMGDLGRAVGKVVMGIVGGVVSAVSGVSSFMSNPFGALAVGLLVLAGLAAAFFAFRYVMR LQSNPMKALYPLTTKELKNPTNPDASGEGEEGGDFDEAKLAEAREMIRYMALVSAMERTEHKAKKKGTSALLSAKVTDMV MRKRRNTNYTQVPNKDGDADEDDL A1Z0P7 subtomogramAveraging particle 7.8 20.0 C8H18N2O4S Hepes 150.0 NaCl Sodium Chloride Quantifoil R2/1 COPPER CARBON HOLEY 12.0 GLOW DISCHARGE 120 ETHANE-PROPANE HOMEMADE PLUNGER

Protein recombinantly expressed in membrane protein enriched extracellular vesicles (MPEEVs)

FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.0 1.6 3.5 OTHER NITROGEN GIF Quantum LS 20

Additional Dataset collected using Titan Krios (FEI Thermo) at 300 kV with a 70 um C2 aperture and post-column QUANTUM energy filter operated in Zero-Loss mode using 20 eV energy slit and K2 Summit direct electron detector in counting mode (Gatan). Defocus range: 2300 - 4900 nm.

GATAN K2 SUMMIT (4k x 4k) COUNTING 3836 3710 2.3 1 1 C3 BACK PROJECTION 9.1 FSC 0.143 CUT-OFF PEET 46067 99 56176 Manual 3dmod OTHER PEET emd_11123.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 100 100 100 0 0 0 100 100 100 160.0 160.0 160.0 90.0 90.0 90.0 X Y Z -0.33630377 0.3112999 0.0000015608573 0.0327678 1.6 1.6 1.6 0.056 AUTHOR ::::EMDATABANK.org::::EMD-11123:::: Pre-fusion structure of glycoprotein B of Herpes simplex virus 1 5V2S A 104-723 PDB experimental model FLEXIBLE FIT Cross correlation coefficient REAL 300.0