<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1111" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2005-02-25</deposition>
         <header_release>2005-02-25</header_release>
         <map_release>2006-06-07</map_release>
         <update>2011-05-26</update>
      </key_dates>
      <title>A quasi-atomic model of human adenovirus type 5 capsid.</title>
      <authors_list>
         <author>Fabry CM</author>
         <author>Rosa-Calatrava M</author>
         <author>Conway JF</author>
         <author>Cusack S</author>
         <author>Ruigrok RW</author>
         <author>Schoehn G</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Fabry CM</author>
               <author order="2">Rosa-Calatrava M</author>
               <author order="3">Conway JF</author>
               <author order="4">Zubieta C</author>
               <author order="5">Cusack S</author>
               <author order="6">Ruigrok RW</author>
               <author order="7">Schoehn G</author>
               <title>A quasi-atomic model of human adenovirus type 5 capsid.</title>
               <journal>EMBO J.</journal>
               <volume>24</volume>
               <first_page>1645</first_page>
               <last_page>1654</last_page>
               <year>2005</year>
               <external_references type="PUBMED">15861131</external_references>
               <external_references type="DOI">doi:10.1038/sj.emboj.7600653</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>4v4u</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Human adenovirus type 5 pIX deletion mutant</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Human adenovirus type 5 pIX deletion mutant</name>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">150</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name>unidentified adenovirus</name>
            <sci_species_name ncbi="10535">unidentified adenovirus</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <molecular_weight>
               <experimental units="MDa">150</experimental>
               <theoretical units="MDa">150</theoretical>
            </molecular_weight>
            <virus_shell shell_id="1">
               <name>adenovirus</name>
               <diameter units="&#8491;">900</diameter>
               <triangulation>25</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SEROTYPE</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>true</virus_empty>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.8</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>150 mM NaCl 20 mM Tris-HCl pH 7.5</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Cryo EM</details>
               </staining>
               <grid>
                  <details>Quantifoil grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">90</chamber_temperature>
                  <instrument>OTHER</instrument>
                  <details>Vitrification instrument: Zeiss plunger</details>
                  <method>Manual blot for 1-2 seconds before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200T</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.1</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">0.25</nominal_defocus_max>
               <nominal_magnification>27500.0</nominal_magnification>
               <calibrated_magnification>28050.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">90</temperature_min>
                  <temperature_max units="K">90</temperature_max>
                  <temperature_average units="K">90</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>objective lens astigmatism was corrected at 100,000</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2003-11-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>ZEISS SCAI</scanner>
                        <sampling_interval units="&#181;m">7</sampling_interval>
                     </digitization_details>
                     <number_real_images>10</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                     <od_range>1.2</od_range>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>CTFMIX</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">22.0</resolution>
               <resolution_method>FSC 0.33 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>PFT EM3DR</name>
                  </software>
               </software_list>
               <details>Final maps were calculated from 660 single images</details>
               <number_images_used>660</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="351233">
      <file>emd_1111.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>448</col>
         <row>448</row>
         <sec>448</sec>
      </dimensions>
      <origin>
         <col>-224</col>
         <row>-224</row>
         <sec>-224</sec>
      </origin>
      <spacing>
         <x>448</x>
         <y>448</y>
         <z>448</z>
      </spacing>
      <cell>
         <a units="&#8491;">1117.31</a>
         <b units="&#8491;">1117.31</b>
         <c units="&#8491;">1117.31</c>
         <alpha units="deg">90</alpha>
         <beta units="deg">90</beta>
         <gamma units="deg">90</gamma>
      </cell>
      <axis_order>
         <fast>Z</fast>
         <medium>X</medium>
         <slow>Y</slow>
      </axis_order>
      <statistics>
         <minimum>-19341.0</minimum>
         <maximum>19452.0</maximum>
         <average>344.139999999999986</average>
         <std>2272.690000000000055</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.494</x>
         <y units="&#8491;">2.494</y>
         <z units="&#8491;">2.494</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>4790.0</level>
         </contour>
      </contour_list>
      <annotation_details>Adenovirus pIX deletion mutant structure (multiple frozen and thawed sample)</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1111::::</details>
   </map>
</emd>