2020-07-29 REL PDBe PDBe PDBe 2020-05-29 2020-07-29 2020-07-29 2020-07-29 French National Research Agency ANR-19-CE11-0024-02 France Masked cryo-EM map of La Crosse virus polymerase zinc-binding domain and mid domain Arragain B Effantin G Schoehn G Cusack S Malet H Arragain B Effantin G Gerlach P Reguera J Schoehn G Cusack S Malet H Pre-initiation and elongation structures of full-length La Crosse virus polymerase reveal functionally important conformational changes. Nat Commun UK 11 3590 3590 2020 32681014 doi:10.1038/s41467-020-17349-4 2041-1723 EMD-11093 other EM volume EMD-10095 other EM volume EMD-11107 associated EM volume La Crosse virus polymerase mid domain and zinc-binding domain La Crosse virus polymerase mid domain and zinc-binding domain 0 1
Masked cryo-EM map of La Crosse virus full-length polymerase, displaying only the mid domain and the zinc-binding domain. Masking, 3D classification and refinement enable to obtain a structure of the zinc-binding domain.
0.265 La Crosse virus polymerase (expression and purification: full length polymerase, masked map: zinc-binding domain and mid domain only) La Crosse orthobunyavirus
La Crosse virus polymerase expression and purification: full length polymerase with an uncleaved N-terminal His-tag masked map: zinc-binding domain and mid domain only (residues 1752-1841 and 1978-2263)
Trichoplusia ni LEVO MGHHHHHHDYDIPTTENLYFQGMDYQEYQQFLARINTARDACVAKDIDVDLLMARHDYFGRELCKSLNIEYRNDVPFIDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVITYDKYYELTRDISDRLSIPIEIVIIRIDPVSRDLHINSDRFKELYPTIVVDINFNQFFDLKQLLYEKFGDDEEFLLKVAHGDFTLTAPWCKTGCPEFWKHPIYKEFKMSMPVPERRLFEESVKFNAYESERWNTNLVKIREYTKKDYSEHISKSAKNIFLASGFYKQPNKNEISEGWTLMVERVQDQREISKSLHDQKPSIHFIWGAHNPGNSNNATFKLILLSKSLQSIKGISTYTEAFKSLGKMMDIGDKAIEYEEFCMSLKSKARSSWKQIMNKKLEPKQINNALVLWEQQFMINNDLIDKSEKLKLFKNFCGIGKHKQFKNKMLEDLEVSKPKILDFDDANMYLASLTMMEQSKKILSKSNGLKPDNFILNEFGSRIKDANKETYDNMHKIFETGYWQCISDFSTLMKNILSVSQYNRHNTFRIAMCANNNVFAIVFPSADIKTKKATVVYSIIVLHKEEENIFNPGCLHGTFKCMNGYISISRAIRLDKERCQRIVSSPGLFLTTCLLFKHDNPTLVMSDIMNFSIYTSLSITKSVLSLTEPARYMIMNSLAISSNVKDYIAEKFSPYTKTLFSVYMTRLIKNACFDAYDQRQRVQLRDIYLSDYDITQKGIKDNRELTSIWFPGSVTLKEYLTQIYLPFYFNAKGLHEKHHVMVDLAKTILEIECEQRENIKEIWSTNCTKQTVNLKILIHSLCKNLLADTSRHNHLRNRIENRNNFRRSITTISTFTSSKSCLKIGDFRKEKELQSVKQKKILEVQSRKMRLANPMFVTDEQVCLEVGHCNYEMLRNAMPNYTDYISTKVFDRLYELLDKKVLTDKPVIEQIMDMMIDHKKFYFTFFNKGQKTSKDREIFVGEYEAKMCMYAVERIAKERCKLNPDEMISEPGDGKLKVLEQKSEQEIRFLVETTRQKNREIDEAIEALATEGYESNLGKIEKLSLGKAKGLKMEINADMSKWSAQDVFYKYFWLIALDPILYPQEKERILYFMCNYMDKELILPDELLFNLLDQKVAYQNDIIATMTNQLNSNTVLIKRNWLQGNFNYTSSYVHSCAMSVYKEILKEAITLLDGSILVNSLVHSDDNQTSITIVQDKMENDKIIDFAMKEFERACLTFGCQANMKKTYVTNCIKEFVSLFNLYGEPFSIYGRFLLTSVGDCAYIGPYEDLASRISSAQTAIKHGCPPSLAWVSIAISHWMTSLTYNMLPGQSNDPIDYFPAENRKDIPIELNGVLDAPLSMISTVGLESGNLYFLIKLLSKYTPVMQKRESVVNQIAEVKNWKVEDLTDNEIFRLKILRYLVLDAEMDPSDIMGETSDMRGRSILTPRKFTTAGSLRKLYSFSKYQDRLSSPGGMVELFTYLLEKPELLVTKGEDMKDYMESVIFRYNSKRFKESLSIQNPAQLFIEQILFSHKPVIDFSGIRDKYINLHDSRALEKEPDILGKVTFTEAYRLLMRDLSSLELTNDDIQVIYSYIILNDPMMITIANTHILSIYGSPQRRMGMSCSTMPEFRNLKLIHHSPALVLRAYSKNNPDIQGADPTEMARDLVHLKEFVENTNLEEKMKVRIAMNEAEKGQRDIVFELKEMTRFYQVCYEYVKSTEHKIKVFILPAKSYTTTDFCSLMQGNLIKDKEWYTVHYLKQILSGGHKAIMQHNATSEQNIAFECFKLITHFADSFIDSLSRSAFLQLIIDEFSYKDVKVSKLYDIIKNGYNRTDFIPLLFRTGDLRQADLDKYDAMKSHERVTWNDWQTSRHLDMGSINLTITGYNRSITIIGEDNKLTYAELCLTRKTPENITISGRKLLGSRHGLKFENMSKIQTYPGNYYITYRKKDRHQFVYQIHSHESITRRNEEHMAIRTRIYNEITPVCVVNVAEVDGDQRILIRSLDYLNNDIFSLSRIKVGLDEFATIKKAHFSKMVSFEGPPIKTGLLDLTELMKSQDLLNLNYDNIRNSNLISFSKLICCEGSDNINDGLEFLSDDPMNFTEGEAIHSTPIFNIYYSKRGERHMTYRNAIKLLIERETKIFEEAFTFSENGFISPENLGCLEAVVSLIKLLKTNEWSTVIDKCIHICLIKNGMDHMYHSFDVPKCFMGNPITRDINWVMFREFINSLPGTDIPPWNVMTENFKKKCIALINSKFETQRDFSEFTKLMKKEGGRSNIEFD 2.7.7.48 singleParticle particle 0.2 8 20.0 Tris-HCl 150.0 NaCl 2.0 TCEP
20 mM Tris-HCl pH 8, 150 mM NaCl, 2 mM TCEP
 UltrAuFoil GOLD 300 GOLD HOLEY GLOW DISCHARGE
30 mA
 ETHANE 100 90 FEI VITROBOT MARK IV
blot time: 2 sec, blot force: 1.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 -0.8 -3.5 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 90.0 90.0 GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 2 16498 1.25 1 4065475 cryoSPARC 1 C1 BACK PROJECTION 3.49 FSC 0.143 CUT-OFF RELION 3.1 51842 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION 3.1 10 37000 RELION 3.1
Masked 3D classification with the mid domain and the zinc-binding domain
 emd_11107.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 247.79999 247.79999 247.79999 90.0 90.0 90.0 X Y Z -0.037164014 0.07140159 0.0000521846 0.0011921142 0.826 0.826 0.826 0.016 AUTHOR Masked cryo-EM map of La Crosse virus polymerase zinc-binding domain and mid domain AB INITIO MODEL Cross-correlation REAL 84.74