2024-05-22 REL PDBe PDBe PDBe 2020-05-16 2020-07-08 2020-07-08 2024-05-22 Wellcome Trust 100237/Z/12/Z United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) BB/N002954/1 United Kingdom Medical Research Council (MRC, United Kingdom) MC_PC_171136 United Kingdom The structure of the tetrameric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex Fairall L Saleh A HDAC1 MIDEAS ELMSAN1 DNTTIP1 TDIF1 histone deacetylase MiDAC, GENE REGULATION Turnbull RE Fairall L Saleh A Kelsall E Morris KL Ragan TJ Savva CG Chandru A Millard CJ Makarova OV Smith CJ Roseman AM Fry AM Cowley SM Schwabe JWR The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure. Nat Commun UK 11 3252 3252 2020 32591534 doi:10.1038/s41467-020-17078-8 2041-1723 Itoh T Fairall L Muskett FW Milano CP Watson PJ Arnaudo N Saleh A Millard CJ El-Mezgueldi M Martino F Schwabe JWR Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting. Nucleic Acids Res. UK 43 2033 2044 2015 25653165 doi:10.1093/nar/gkv068 1362-4962 0389 NARHAD 6z2k FULLOVERLAP Tetrameric complex of the MiDAC deacetylase complex containing HDAC1, the ELM2-SANT domain of MIDEAS and the dimerisation domain of DNTTIP1 Tetrameric complex of the MiDAC deacetylase complex containing HDAC1, the ELM2-SANT domain of MIDEAS and the dimerisation domain of DNTTIP1 0 1 2 3 Homo sapiens 0.357 Histone deacetylase 1 Homo sapiens 0.055178906 4 Homo sapiens LEVO MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIR PDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI LELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVAL DTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDD PDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK LA Q13547 3.5.1.98 Deoxynucleotidyltransferase terminal-interacting protein 1 Homo sapiens 0.014381293 4 Homo sapiens LEVO MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINE EIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCLEQAKLLFS Q9H147 Mitotic deacetylase-associated SANT domain protein Homo sapiens 0.019794771 4 Homo sapiens LEVO GAVSIEPRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHC LHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTY KKQVKIGRNGTLT Q6PJG2 ZINC ION 6.5409e-05 4 ZN POTASSIUM ION 3.9098e-05 8 K INOSITOL HEXAKISPHOSPHATE 0.0006600349999999999 4 IHP singleParticle particle 0.45 7.5 12.5 HEPES 25.0 potassium acetate 0.25 TCEP 0.1 glutaraldehdye 50.0 Tris/HCl Quantifoil, UltrAuFoil, R1.2/1.3 GOLD 300 GOLD HOLEY ARRAY GLOW DISCHARGE
30 mA for 30 sec
 ETHANE 100 277 FEI VITROBOT MARK IV
Blot time 3 sec, blot force 10..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.5 0.5 0.5 75000.0 129629.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 100.0 100.0 VOLTA PHASE PLATE FEI FALCON III (4k x 4k) COUNTING 4096 4096 2 2752 60.0 36.0 1 151434 1 D2 4.5 FSC 0.143 CUT-OFF RELION 3.0 63222 ANGULAR RECONSTITUTION RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 5 RELION 3.0 emd_11042.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.036822643 0.060755543 0.00007943722 0.0012748084 1.08 1.08 1.08 0.01 AUTHOR 5ICN B PDB experimental model 4D6K PDB experimental model FLEXIBLE FIT emd_11042_msk_1.map emd_11042_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.016211754 0.04227561 -0.0000003006681 0.0013395363 1.08 1.08 1.08 AUTHOR emd_11042_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.017688131 0.045482088 0.0000008512462 0.001354491 1.08 1.08 1.08 AUTHOR