Dynamic structure of the apical stem loop of the stem loop 2 motif (s2m) from SCoV-2 Delta variant
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
Sequence numbering corresponds to position in the RNA genome -29,000
Severe acute respiratory syndrome coronavirus 2
dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate
250 uM [U-100% 13C; U-100% 15N] s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
s2m Delta_short RNA in 25 mM Kpi, 50 mM KCl, pH 6.2
1700 uM [U-100% 13C; U-100% 15N] s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
150 uM [U-100% 13C; U-100% 15N] s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
150 uM [U-13C; U-15N]-Ade; U[U-13C; U-15N]-Ura s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
200 uM [U-13C; U-15N]-Cyt s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
700 uM [U-13C; U-15N]-Cyt s2m Delta_short RNA, 25 mM dipotassium hydrogen orthophosphate/potassium dihydrogen phosphate, 50 mM potassium chloride, 95% H2O/5% D2O
Brunger, Adams, Clore, Gros, Nilges and Read
s2m, Covid-19, NMR Assignment, Molecular dynamic simulations, NMR dynamics, RNA