Cryo-EM structure of Phthaloyl-CoA decarboxylase (Pcd) bound with substrate analog/inhibitor, 2-CN-benzoyl-CoA

S-[2-[3-[[(2R)-4-[[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-cyanobenzenecarbothioate

BYN A 601 HAS WRONG CHIRALITY AT ATOM C20

BYN B 601 HAS WRONG CHIRALITY AT ATOM C20

BYN C 601 HAS WRONG CHIRALITY AT ATOM C20

BYN D 601 HAS WRONG CHIRALITY AT ATOM C20

BYN E 601 HAS WRONG CHIRALITY AT ATOM C20

BYN F 601 HAS WRONG CHIRALITY AT ATOM C20

pdb from the first holo-complex was used

Phthaloyl-CoA decarboxylase (Pcd) bound with 2-CN-benzoyl-CoA

ERVGEKDLRAALEWFRSKGYLVETNKEVNPDLEITGLQKIFDGSLPMLFNNVKDMPHARAITNLFGDIRVVEELFGWENS
LDRVKKVARAIDHPLKPVIIGQDEAPVQEEVLTTDLDVNKWLTAIRHTPLETEMTIGSGISCVVGPYFDGGSHIGYNRMN
FRWGNVGTFQISPGSHMWQVMTEHYKDDEPIPLTMCFGVPPSCTYVAGAGFDYAILPKGCDEIGIAGAIQGSPVRLVKCR
TIDAYTLADAEYVLEGYLHPRDKRYETAESEAADIQGRFHFHPEWAGYMGKAYKAPTFHVTAITMRRRESKPIIFPLGVH
TADDANIDTSVRESAIFALCERLQPGIVQNVHIPYCMTDWGGCIIQVKKRNQIEEGWQRNFLAAILACSQGMRLAIAVSE
DVDIYSMDDIMWCLTTRVNPQTDILNPLPGGRGQTFMPAERMTSGDKQWTASNTQFEGGMGIDATVPYGYESDFHRPVYG
VDLVKPENFFDAKDIDKMKSRMAGWVLSLARTGR

prFMN, plastic degradation, Phthalates, anaerobic, light sensitive, Co-enzyme A, decarboxylase, cyano-benzoyl CoA, inhibitor bound, substrate analog, FLAVOPROTEIN