Crystal structure of the Mot1 N-terminal domain in complex with TBP and NC2 bound to a promoter DNA fragment

Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1.

TATA-binding protein-associated phosphoprotein

DNA (5'-D(P*CP*CP*AP*CP*CP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*T)-3')

DNA (5'-D(P*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*GP*GP*TP*GP*G)-3')

(MSE)PKQESQKKKLTRFPISRLKRI(MSE)QLNEDIGKIGASVPVVASKAIE(MSE)FLTEIVGLTLKEARKKSSSR
(MSE)SSEFIIRATESDPKFAFLKN(MSE)EQFKNRE

MPKQESQKKKLTRFPISRLKRIMQLNEDIGKIGASVPVVASKAIEMFLTEIVGLTLKEARKKSSSRMSSEFIIRATESDP
KFAFLKNMEQFKNRE

GH(MSE)N(MSE)EKNDDENTLPKATVDK(MSE)VSS(MSE)LPKNSVVPKESKEIFQNACIYFLN(MSE)LTLEANKAC
EEEKKKTISYEHVYKALKNLGFESYVESC(MSE)KEHENYESYIKQKPSKIDKFKDSGLT(MSE)EELHSQQIKLFQNAK
LQFERSFEDDHYGDNDG

GHMNMEKNDDENTLPKATVDKMVSSMLPKNSVVPKESKEIFQNACIYFLNMLTLEANKACEEEKKKTISYEHVYKALKNL
GFESYVESCMKEHENYESYIKQKPSKIDKFKDSGLTMEELHSQQIKLFQNAKLQFERSFEDDHYGDNDG

GH(MSE)NRLEKFFTTLNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSL(MSE)FQ
FKLVTDFKIEYKESSSIYLSSTGEQFNVQAPSIQEQKR(MSE)VRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERP
IENVLDFFEQISDNLLSYEWYKRHGAFLAFAA(MSE)FSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPV
RDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLC
HFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILN(MSE)VK
NLSEESIDFLVAEVVLIEEKDEIRE(MSE)AIKLLKKRRDLPKNLILHF(MSE)NVIGGSLYEPYSEDDFVSYEDLYFTK
SGINVVGKDEILKNRCLLFECI(MSE)KSGLPDLQSTIETTTSRTFISLYRSVQALVKDTPYTPANIEELEYYFDRCKDL
K(MSE)APLKEFKKKLSAPGIRSIHP(MSE)VDPLYSDYTR(MSE)VASIEFPGLERATALFEVETCKQFLHLFSK
(MSE)ITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLAHSFFHKIGSLENRLDFFSKTIHIYTKTSQIQK
IGFVFDDALREKNITVINGF(MSE)RSLEFNEKFVRKALEDLDVELLDAVL(MSE)SGDHSFNPLFVKPLLRNISGNIDR
EASSKVLSKVIPTLGFSTNTKISKDLLE(MSE)IEREKKSLESL

GHMNRLEKFFTTLNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFK
IEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLDFFEQIS
DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIG
PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCW
KNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEK
DEIREMAIKLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGINVVGKDEILKNRCLLFECIMKSGLP
DLQSTIETTTSRTFISLYRSVQALVKDTPYTPANIEELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYT
RMVASIEFPGLERATALFEVETCKQFLHLFSKMITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLAHSFF
HKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNITVINGFMRSLEFNEKFVRKALEDLDVELLDAVLMSGDH
SFNPLFVKPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKISKDLLEMIEREKKSLESL

GH(MSE)DAPDISYEHQETSVPNRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVI(MSE)RIREPKTT
ALIFASGK(MSE)VITGAKSEKSSR(MSE)AAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCS
YEPELFPGLIYR(MSE)VKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRKA

GHMDAPDISYEHQETSVPNRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGK
MVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKP
KIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRKA

(DG)(DC)(DC)(DA)(DC)(DC)(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DG)(DC)(DC)(DC)
(DT)(DA)(DC)(DT)

(DA)(DG)(DT)(DA)(DG)(DG)(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DG)(DG)(DG)(DG)(DG)
(DT)(DG)(DG)(DC)

Transcription, protein-DNA complex, Swi2/Snf2

PKQESQKKKLTRFPISRLKRIMQLNEDIGKIGASVPVVASKAIEMFLTEIVGLTLKEARKKSSSRMSSEFIIRATESDPK
FAFLKNMEQFKNRE

NMEKNDDENTLPKATVDKMVSSMLPKNSVVPKESKEIFQNACIYFLNMLTLEANKACEEEKKKTISYEHVYKALKNLGFE
SYVESCMKEHENYESYIKQKPSKIDKFKDSGLTMEELHSQQIKLFQNAKLQFERSFEDDHYGDNDG

NRLEKFFTTLNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEY
KESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLDFFEQISDNL
LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPND
IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNI
ESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEI
REMAIKLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGINVVGKDEILKNRCLLFECIMKSGLPDLQ
STIETTTSRTFISLYRSVQALVKDTPYTPANIEELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTRMV
ASIEFPGLERATALFEVETCKQFLHLFSKMITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLAHSFFHKI
GSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNITVINGFMRSLEFNEKFVRKALEDLDVELLDAVLMSGDHSFN
PLFVKPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKISKDLLEMIEREKKSLESL

DAPDISYEHQETSVPNRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVI
TGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIV
LLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRKA