Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome
(DC)(DT)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DA)(DC)(DT)(DG)(DG)(DG)(DG)(DA)(DG)(DT)(DG) (DG)(DT)
DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1
distance geometry, DGSA-distance geometry simulated annealing, simulated annealing, molecular dynamics
0.1-1 mM DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1, 90% H2O/10% D2O
Schwieters, Kuszewski, Tjandra and Clore
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
G-quadruplex, HIV-1, Long Terminal Repeat, DNA