Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*(PSU)P*CP*CP*CP*C)-3')
structures with the least restraint violations
distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics
2.0 mM Pseudouridine_ASL_Tyr, 10 mM potassium chloride, 10 mM potassium phosphate, 0.02 mM EDTA, 90% H2O/10% D2O
Schwieters, Kuszewski, Tjandra and Clore