{"data_9YDI":{"entry":{"id":["9YDI"]},"audit_conform":{"dict_name":["mmcif_pdbx.dic"],"dict_version":["5.416"],"dict_location":["http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic"]},"database_2":{"database_id":["PDB","WWPDB"],"database_code":["9YDI","D_1000300148"],"pdbx_database_accession":["pdb_00009ydi",null],"pdbx_DOI":["10.2210/pdb9ydi/pdb",null]},"pdbx_audit_revision_history":{"ordinal":[1],"data_content_type":["Structure model"],"major_revision":[1],"minor_revision":[0],"revision_date":["2026-08-05"],"part_number":[null]},"pdbx_audit_revision_details":{"ordinal":[1],"revision_ordinal":[1],"data_content_type":["Structure model"],"provider":["repository"],"type":["Initial release"],"description":[null],"details":[null]},"pdbx_database_status":{"status_code":["REL"],"status_code_sf":["REL"],"status_code_mr":[null],"entry_id":["9YDI"],"recvd_initial_deposition_date":["2025-09-22"],"SG_entry":["N"],"deposit_site":["RCSB"],"process_site":["RCSB"],"status_code_cs":[null],"status_code_nmr_data":[null],"methods_development_category":[null],"pdb_format_compatible":["Y"]},"pdbx_contact_author":{"id":[2],"email":["martin.egli@vanderbilt.edu"],"name_first":["Martin"],"name_last":["Egli"],"name_mi":[null],"role":["principal investigator/group leader"],"identifier_ORCID":["0000-0003-4145-356X"]},"audit_author":{"name":["Harp, J.M.","Egli, M.E."],"pdbx_ordinal":[1,2],"identifier_ORCID":["0000-0002-9116-5606","0000-0003-4145-356X"]},"citation":{"abstract":[null],"abstract_id_CAS":[null],"book_id_ISBN":[null],"book_publisher":[null],"book_publisher_city":[null],"book_title":[null],"coordinate_linkage":[null],"country":["US"],"database_id_Medline":[null],"details":[null],"id":["primary"],"journal_abbrev":["Org.Lett."],"journal_id_ASTM":[null],"journal_id_CSD":[null],"journal_id_ISSN":["1523-7060"],"journal_full":[null],"journal_issue":[null],"journal_volume":["28"],"language":[null],"page_first":["9133"],"page_last":["9138"],"title":["A Postsynthetic Strategy for Oligonucleotides Containing 2-Fluoro-adenine and Isoguanine Nucleobases."],"year":[2026],"database_id_CSD":[null],"pdbx_database_id_DOI":["10.1021/acs.orglett.6c01203"],"pdbx_database_id_PubMed":[42455745],"pdbx_database_id_patent":[null],"unpublished_flag":[null]},"citation_author":{"citation_id":["primary","primary","primary","primary","primary","primary"],"name":["Madaoui, M.","Kundu, J.","Datta, D.","Harp, J.M.","Egli, M.","Manoharan, M."],"ordinal":[1,2,3,4,5,6],"identifier_ORCID":[null,"0000-0003-2669-8112","0000-0003-2077-1294",null,"0000-0003-4145-356X","0000-0002-7931-1172"]},"entity":{"id":["1","2"],"type":["polymer","water"],"src_method":["syn","nat"],"pdbx_description":["RNA 12-mer","water"],"formula_weight":[3851.36,18.015],"pdbx_number_of_molecules":[1,82],"pdbx_ec":[null,null],"pdbx_mutation":[null,null],"pdbx_fragment":[null,null],"details":["Dickerson-Drew RNA dodecamer containing an A/G mismatch",null]},"entity_poly":{"entity_id":["1"],"type":["polyribonucleotide"],"nstd_linkage":["no"],"nstd_monomer":["no"],"pdbx_seq_one_letter_code":["CGCGAAUUAGCG"],"pdbx_seq_one_letter_code_can":["CGCGAAUUAGCG"],"pdbx_strand_id":["A"],"pdbx_target_identifier":[null]},"pdbx_entity_nonpoly":{"entity_id":["2"],"name":["water"],"comp_id":["HOH"]},"entity_poly_seq":{"entity_id":["1","1","1","1","1","1","1","1","1","1","1","1"],"num":[1,2,3,4,5,6,7,8,9,10,11,12],"mon_id":["C","G","C","G","A","A","U","U","A","G","C","G"],"hetero":["n","n","n","n","n","n","n","n","n","n","n","n"]},"pdbx_entity_src_syn":{"entity_id":["1"],"pdbx_src_id":[1],"pdbx_alt_source_flag":["sample"],"pdbx_beg_seq_num":[1],"pdbx_end_seq_num":[12],"organism_scientific":["synthetic construct"],"organism_common_name":[null],"ncbi_taxonomy_id":["32630"],"details":[null]},"chem_comp":{"id":["A","C","G","HOH","U"],"type":["RNA linking","RNA linking","RNA linking","non-polymer","RNA linking"],"mon_nstd_flag":["y","y","y",null,"y"],"name":["ADENOSINE-5'-MONOPHOSPHATE","CYTIDINE-5'-MONOPHOSPHATE","GUANOSINE-5'-MONOPHOSPHATE","WATER","URIDINE-5'-MONOPHOSPHATE"],"pdbx_synonyms":[null,null,null,null,null],"formula":["C10 H14 N5 O7 P","C9 H14 N3 O8 P","C10 H14 N5 O8 P","H2 O","C9 H13 N2 O9 P"],"formula_weight":[347.221,323.197,363.221,18.015,324.181]},"pdbx_poly_seq_scheme":{"asym_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"entity_id":["1","1","1","1","1","1","1","1","1","1","1","1"],"seq_id":[1,2,3,4,5,6,7,8,9,10,11,12],"mon_id":["C","G","C","G","A","A","U","U","A","G","C","G"],"ndb_seq_num":[1,2,3,4,5,6,7,8,9,10,11,12],"pdb_seq_num":["1","2","3","4","5","6","7","8","9","10","11","12"],"auth_seq_num":["1","2","3","4","5","6","7","8","9","10","11","12"],"pdb_mon_id":["C","G","C","G","A","A","U","U","A","G","C","G"],"auth_mon_id":["C","G","C","G","A","A","U","U","A","G","C","G"],"pdb_strand_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"pdb_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null],"hetero":["n","n","n","n","n","n","n","n","n","n","n","n"]},"pdbx_nonpoly_scheme":{"asym_id":["B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B"],"entity_id":["2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2","2"],"mon_id":["HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH"],"ndb_seq_num":["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","32","33","34","35","36","37","38","39","40","41","42","43","44","45","46","47","48","49","50","51","52","53","54","55","56","57","58","59","60","61","62","63","64","65","66","67","68","69","70","71","72","73","74","75","76","77","78","79","80","81","82"],"pdb_seq_num":["101","102","103","104","105","106","107","108","109","110","111","112","113","114","115","116","117","118","119","120","121","122","123","124","125","126","127","128","129","130","131","132","133","134","135","136","137","138","139","140","141","142","143","144","145","146","147","148","149","150","151","152","153","154","155","156","157","158","159","160","161","162","163","164","165","166","167","168","169","170","171","172","173","174","175","176","177","178","179","180","181","182"],"auth_seq_num":["67","50","32","56","2","28","37","42","31","39","4","64","41","23","1","82","6","63","3","11","78","47","24","13","22","43","16","60","54","40","20","25","30","17","9","33","71","27","8","5","12","53","29","34","58","15","46","35","14","61","52","57","7","19","10","18","45","44","62","69","21","79","66","38","73","36","48","59","26","65","68","75","76","77","80","81","49","72","55","74","70","51"],"pdb_mon_id":["HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH"],"auth_mon_id":["HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH","HOH"],"pdb_strand_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"],"pdb_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null]},"software":{"citation_id":[null,null,null,null],"classification":["refinement","data reduction","data scaling","phasing"],"compiler_name":[null,null,null,null],"compiler_version":[null,null,null,null],"contact_author":[null,null,null,null],"contact_author_email":[null,null,null,null],"date":[null,null,null,null],"description":[null,null,null,null],"dependencies":[null,null,null,null],"hardware":[null,null,null,null],"language":[null,null,null,null],"location":[null,null,null,null],"mods":[null,null,null,null],"name":["PHENIX","PROTEUM PLUS","PROTEUM PLUS","MOLREP"],"os":[null,null,null,null],"os_version":[null,null,null,null],"type":[null,null,null,null],"version":["1.21.1_5286",null,null,null],"pdbx_reference_DOI":[null,null,null,null],"pdbx_ordinal":[1,2,3,4]},"cell":{"angle_alpha":[90],"angle_alpha_esd":[null],"angle_beta":[128.929],"angle_beta_esd":[null],"angle_gamma":[90],"angle_gamma_esd":[null],"entry_id":["9YDI"],"details":[null],"formula_units_Z":[null],"length_a":[41.168],"length_a_esd":[null],"length_b":[34.964],"length_b_esd":[null],"length_c":[31.91],"length_c_esd":[null],"volume":[35731.029],"volume_esd":[null],"Z_PDB":[4],"reciprocal_angle_alpha":[null],"reciprocal_angle_beta":[null],"reciprocal_angle_gamma":[null],"reciprocal_angle_alpha_esd":[null],"reciprocal_angle_beta_esd":[null],"reciprocal_angle_gamma_esd":[null],"reciprocal_length_a":[null],"reciprocal_length_b":[null],"reciprocal_length_c":[null],"reciprocal_length_a_esd":[null],"reciprocal_length_b_esd":[null],"reciprocal_length_c_esd":[null],"pdbx_unique_axis":[null],"pdbx_esd_method":[null]},"symmetry":{"entry_id":["9YDI"],"cell_setting":[null],"Int_Tables_number":[5],"space_group_name_Hall":["C 2y"],"space_group_name_H-M":["C 1 2 1"],"pdbx_full_space_group_name_H-M":[null]},"exptl":{"absorpt_coefficient_mu":[null],"absorpt_correction_T_max":[null],"absorpt_correction_T_min":[null],"absorpt_correction_type":[null],"absorpt_process_details":[null],"entry_id":["9YDI"],"crystals_number":[1],"details":[null],"method":["X-RAY DIFFRACTION"],"method_details":[null]},"exptl_crystal":{"colour":[null],"density_diffrn":[null],"density_Matthews":[2.32],"density_method":[null],"density_percent_sol":[46.97],"description":[null],"F_000":[null],"id":["1"],"preparation":[null],"size_max":[null],"size_mid":[null],"size_min":[null],"size_rad":[null],"colour_lustre":[null],"colour_modifier":[null],"colour_primary":[null],"density_meas":[null],"density_meas_esd":[null],"density_meas_gt":[null],"density_meas_lt":[null],"density_meas_temp":[null],"density_meas_temp_esd":[null],"density_meas_temp_gt":[null],"density_meas_temp_lt":[null],"pdbx_crystal_image_url":[null],"pdbx_crystal_image_format":[null],"pdbx_mosaicity":[null],"pdbx_mosaicity_esd":[null],"pdbx_mosaic_method":[null],"pdbx_mosaic_block_size":[null],"pdbx_mosaic_block_size_esd":[null]},"exptl_crystal_grow":{"apparatus":[null],"atmosphere":[null],"crystal_id":["1"],"details":[null],"method":["VAPOR DIFFUSION, SITTING DROP"],"method_ref":[null],"pH":[null],"pressure":[null],"pressure_esd":[null],"seeding":[null],"seeding_ref":[null],"temp_details":[null],"temp_esd":[null],"time":[null],"pdbx_details":["grown in drops containing 0.3 microliter of 1.0 mM RNA and 0.3 microliter of 10% 2-methyl-2,4-pentanediol (MPD), 12 mM spermine-4HCl, 20 mM MgCl2, 80 mM KCl, 40 mM sodium cacodylate, pH 7.0. The reservoirs contained 70 microliters 40% 2-methyl-2,4-pentanediol"],"pdbx_pH_range":[null],"temp":[293]},"diffrn":{"ambient_environment":[null],"ambient_temp":[100],"ambient_temp_details":[null],"ambient_temp_esd":[null],"crystal_id":["1"],"crystal_support":[null],"crystal_treatment":[null],"details":[null],"id":["1"],"ambient_pressure":[null],"ambient_pressure_esd":[null],"ambient_pressure_gt":[null],"ambient_pressure_lt":[null],"ambient_temp_gt":[null],"ambient_temp_lt":[null],"pdbx_serial_crystal_experiment":["N"]},"diffrn_detector":{"details":[null],"detector":["PIXEL"],"diffrn_id":["1"],"type":["Bruker PHOTON III"],"area_resol_mean":[null],"dtime":[null],"pdbx_frames_total":[null],"pdbx_collection_time_total":[null],"pdbx_collection_date":["2022-08-18"],"pdbx_frequency":[null],"id":[null],"number_of_axes":[null]},"diffrn_radiation":{"collimation":[null],"diffrn_id":["1"],"filter_edge":[null],"inhomogeneity":[null],"monochromator":["confocal multilayer"],"polarisn_norm":[null],"polarisn_ratio":[null],"probe":[null],"type":[null],"xray_symbol":[null],"wavelength_id":["1"],"pdbx_monochromatic_or_laue_m_l":["M"],"pdbx_wavelength_list":[null],"pdbx_wavelength":[null],"pdbx_diffrn_protocol":["SINGLE WAVELENGTH"],"pdbx_analyzer":[null],"pdbx_scattering_type":["x-ray"]},"diffrn_radiation_wavelength":{"id":["1"],"wavelength":[1.3412],"wt":[1]},"diffrn_source":{"current":[null],"details":[null],"diffrn_id":["1"],"power":[null],"size":[null],"source":["LIQUID ANODE"],"target":[null],"type":["BRUKER METALJET"],"voltage":[null],"take-off_angle":[null],"pdbx_wavelength_list":["1.3412"],"pdbx_wavelength":[null],"pdbx_synchrotron_beamline":[null],"pdbx_synchrotron_site":[null]},"reflns":{"B_iso_Wilson_estimate":[10.01],"entry_id":["9YDI"],"data_reduction_details":[null],"data_reduction_method":[null],"d_resolution_high":[1.03],"d_resolution_low":[16.01],"details":[null],"limit_h_max":[null],"limit_h_min":[null],"limit_k_max":[null],"limit_k_min":[null],"limit_l_max":[null],"limit_l_min":[null],"number_all":[null],"number_obs":[37549],"observed_criterion":[null],"observed_criterion_F_max":[null],"observed_criterion_F_min":[null],"observed_criterion_I_max":[null],"observed_criterion_I_min":[null],"observed_criterion_sigma_F":[null],"observed_criterion_sigma_I":[null],"percent_possible_obs":[98.9],"R_free_details":[null],"Rmerge_F_all":[null],"Rmerge_F_obs":[null],"Friedel_coverage":[null],"number_gt":[null],"threshold_expression":[null],"pdbx_redundancy":[4.5],"pdbx_netI_over_av_sigmaI":[null],"pdbx_netI_over_sigmaI":[4.41],"pdbx_res_netI_over_av_sigmaI_2":[null],"pdbx_res_netI_over_sigmaI_2":[null],"pdbx_chi_squared":[null],"pdbx_scaling_rejects":[null],"pdbx_d_res_high_opt":[null],"pdbx_d_res_low_opt":[null],"pdbx_d_res_opt_method":[null],"phase_calculation_details":[null],"pdbx_Rrim_I_all":[null],"pdbx_Rpim_I_all":[null],"pdbx_d_opt":[null],"pdbx_number_measured_all":[null],"pdbx_diffrn_id":["1"],"pdbx_ordinal":[1],"pdbx_CC_half":[0.996],"pdbx_CC_star":[null],"pdbx_R_split":[null],"pdbx_Rmerge_I_obs":[null],"pdbx_Rmerge_I_all":[null],"pdbx_Rsym_value":[null],"pdbx_CC_split_method":[null],"pdbx_aniso_diffraction_limit_axis_1_ortho[1]":[null],"pdbx_aniso_diffraction_limit_axis_1_ortho[2]":[null],"pdbx_aniso_diffraction_limit_axis_1_ortho[3]":[null],"pdbx_aniso_diffraction_limit_axis_2_ortho[1]":[null],"pdbx_aniso_diffraction_limit_axis_2_ortho[2]":[null],"pdbx_aniso_diffraction_limit_axis_2_ortho[3]":[null],"pdbx_aniso_diffraction_limit_axis_3_ortho[1]":[null],"pdbx_aniso_diffraction_limit_axis_3_ortho[2]":[null],"pdbx_aniso_diffraction_limit_axis_3_ortho[3]":[null],"pdbx_aniso_diffraction_limit_1":[null],"pdbx_aniso_diffraction_limit_2":[null],"pdbx_aniso_diffraction_limit_3":[null],"pdbx_aniso_B_tensor_eigenvector_1_ortho[1]":[null],"pdbx_aniso_B_tensor_eigenvector_1_ortho[2]":[null],"pdbx_aniso_B_tensor_eigenvector_1_ortho[3]":[null],"pdbx_aniso_B_tensor_eigenvector_2_ortho[1]":[null],"pdbx_aniso_B_tensor_eigenvector_2_ortho[2]":[null],"pdbx_aniso_B_tensor_eigenvector_2_ortho[3]":[null],"pdbx_aniso_B_tensor_eigenvector_3_ortho[1]":[null],"pdbx_aniso_B_tensor_eigenvector_3_ortho[2]":[null],"pdbx_aniso_B_tensor_eigenvector_3_ortho[3]":[null],"pdbx_aniso_B_tensor_eigenvalue_1":[null],"pdbx_aniso_B_tensor_eigenvalue_2":[null],"pdbx_aniso_B_tensor_eigenvalue_3":[null],"pdbx_orthogonalization_convention":[null],"pdbx_percent_possible_ellipsoidal":[null],"pdbx_percent_possible_spherical":[null],"pdbx_percent_possible_ellipsoidal_anomalous":[null],"pdbx_percent_possible_spherical_anomalous":[null],"pdbx_redundancy_anomalous":[null],"pdbx_CC_half_anomalous":[null],"pdbx_absDiff_over_sigma_anomalous":[null],"pdbx_percent_possible_anomalous":[null],"pdbx_observed_signal_threshold":[null],"pdbx_signal_type":[null],"pdbx_signal_details":[null],"pdbx_signal_software_id":[null]},"reflns_shell":{"d_res_high":[1.03],"d_res_low":[1.06],"meanI_over_sigI_all":[null],"meanI_over_sigI_obs":[null],"number_measured_all":[null],"number_measured_obs":[null],"number_possible":[null],"number_unique_all":[null],"number_unique_obs":[2667],"percent_possible_obs":[null],"Rmerge_F_all":[null],"Rmerge_F_obs":[null],"meanI_over_sigI_gt":[null],"meanI_over_uI_all":[null],"meanI_over_uI_gt":[null],"number_measured_gt":[null],"number_unique_gt":[null],"percent_possible_gt":[null],"Rmerge_F_gt":[null],"Rmerge_I_gt":[null],"pdbx_redundancy":[null],"pdbx_chi_squared":[null],"pdbx_netI_over_sigmaI_all":[null],"pdbx_netI_over_sigmaI_obs":[null],"pdbx_Rrim_I_all":[null],"pdbx_Rpim_I_all":[null],"pdbx_rejects":[null],"pdbx_ordinal":[1],"pdbx_diffrn_id":["1"],"pdbx_CC_half":[0.07],"pdbx_CC_star":[null],"pdbx_R_split":[null],"percent_possible_all":[null],"Rmerge_I_all":[null],"Rmerge_I_obs":[null],"pdbx_Rsym_value":[null],"pdbx_percent_possible_ellipsoidal":[null],"pdbx_percent_possible_spherical":[null],"pdbx_percent_possible_ellipsoidal_anomalous":[null],"pdbx_percent_possible_spherical_anomalous":[null],"pdbx_redundancy_anomalous":[null],"pdbx_CC_half_anomalous":[null],"pdbx_absDiff_over_sigma_anomalous":[null],"pdbx_percent_possible_anomalous":[null]},"refine":{"aniso_B[1][1]":[null],"aniso_B[1][2]":[null],"aniso_B[1][3]":[null],"aniso_B[2][2]":[null],"aniso_B[2][3]":[null],"aniso_B[3][3]":[null],"B_iso_max":[null],"B_iso_mean":[15.39],"B_iso_min":[null],"correlation_coeff_Fo_to_Fc":[null],"correlation_coeff_Fo_to_Fc_free":[null],"details":[null],"diff_density_max":[null],"diff_density_max_esd":[null],"diff_density_min":[null],"diff_density_min_esd":[null],"diff_density_rms":[null],"diff_density_rms_esd":[null],"entry_id":["9YDI"],"pdbx_refine_id":["X-RAY DIFFRACTION"],"ls_abs_structure_details":[null],"ls_abs_structure_Flack":[null],"ls_abs_structure_Flack_esd":[null],"ls_abs_structure_Rogers":[null],"ls_abs_structure_Rogers_esd":[null],"ls_d_res_high":[1.03],"ls_d_res_low":[16.01],"ls_extinction_coef":[null],"ls_extinction_coef_esd":[null],"ls_extinction_expression":[null],"ls_extinction_method":[null],"ls_goodness_of_fit_all":[null],"ls_goodness_of_fit_all_esd":[null],"ls_goodness_of_fit_obs":[null],"ls_goodness_of_fit_obs_esd":[null],"ls_hydrogen_treatment":[null],"ls_matrix_type":[null],"ls_number_constraints":[null],"ls_number_parameters":[null],"ls_number_reflns_all":[null],"ls_number_reflns_obs":[33859],"ls_number_reflns_R_free":[1714],"ls_number_reflns_R_work":[32145],"ls_number_restraints":[null],"ls_percent_reflns_obs":[98.86],"ls_percent_reflns_R_free":[5.06],"ls_R_factor_all":[null],"ls_R_factor_obs":[0.1724],"ls_R_factor_R_free":[0.1831],"ls_R_factor_R_free_error":[null],"ls_R_factor_R_free_error_details":[null],"ls_R_factor_R_work":[0.1718],"ls_R_Fsqd_factor_obs":[null],"ls_R_I_factor_obs":[null],"ls_redundancy_reflns_all":[null],"ls_redundancy_reflns_obs":[null],"ls_restrained_S_all":[null],"ls_restrained_S_obs":[null],"ls_shift_over_esd_max":[null],"ls_shift_over_esd_mean":[null],"ls_structure_factor_coef":[null],"ls_weighting_details":[null],"ls_weighting_scheme":[null],"ls_wR_factor_all":[null],"ls_wR_factor_obs":[null],"ls_wR_factor_R_free":[null],"ls_wR_factor_R_work":[null],"occupancy_max":[null],"occupancy_min":[null],"solvent_model_details":["FLAT BULK SOLVENT MODEL"],"solvent_model_param_bsol":[null],"solvent_model_param_ksol":[null],"correlation_coeff_I_to_Fcsqd_work":[null],"correlation_coeff_I_to_Fcsqd_free":[null],"pdbx_R_complete":[null],"ls_R_factor_gt":[null],"ls_goodness_of_fit_gt":[null],"ls_goodness_of_fit_ref":[null],"ls_shift_over_su_max":[null],"ls_shift_over_su_max_lt":[null],"ls_shift_over_su_mean":[null],"ls_shift_over_su_mean_lt":[null],"pdbx_ls_sigma_I":[null],"pdbx_ls_sigma_F":[0.01],"pdbx_ls_sigma_Fsqd":[null],"pdbx_data_cutoff_high_absF":[null],"pdbx_data_cutoff_high_rms_absF":[null],"pdbx_data_cutoff_low_absF":[null],"pdbx_isotropic_thermal_model":[null],"pdbx_ls_cross_valid_method":["FREE R-VALUE"],"pdbx_method_to_determine_struct":["MOLECULAR REPLACEMENT"],"pdbx_starting_model":[null],"pdbx_stereochemistry_target_values":["GeoStd + Monomer Library + CDL v1.2"],"pdbx_R_Free_selection_details":[null],"pdbx_stereochem_target_val_spec_case":[null],"pdbx_overall_ESU_R":[null],"pdbx_overall_ESU_R_Free":[null],"pdbx_solvent_vdw_probe_radii":[1.11],"pdbx_solvent_ion_probe_radii":[null],"pdbx_solvent_shrinkage_radii":[0.9],"pdbx_real_space_R":[null],"pdbx_density_correlation":[null],"pdbx_pd_number_of_powder_patterns":[null],"pdbx_pd_number_of_points":[null],"pdbx_pd_meas_number_of_points":[null],"pdbx_pd_proc_ls_prof_R_factor":[null],"pdbx_pd_proc_ls_prof_wR_factor":[null],"pdbx_pd_Marquardt_correlation_coeff":[null],"pdbx_pd_Fsqrd_R_factor":[null],"pdbx_pd_ls_matrix_band_width":[null],"pdbx_overall_phase_error":[27.7276],"pdbx_overall_SU_R_free_Cruickshank_DPI":[null],"pdbx_overall_SU_R_free_Blow_DPI":[null],"pdbx_overall_SU_R_Blow_DPI":[null],"pdbx_TLS_residual_ADP_flag":[null],"pdbx_diffrn_id":["1"],"overall_SU_B":[null],"overall_SU_ML":[0.1359],"overall_SU_R_Cruickshank_DPI":[null],"overall_SU_R_free":[null],"overall_FOM_free_R_set":[null],"overall_FOM_work_R_set":[null],"pdbx_average_fsc_overall":[null],"pdbx_average_fsc_work":[null],"pdbx_average_fsc_free":[null]},"refine_hist":{"pdbx_refine_id":["X-RAY DIFFRACTION"],"cycle_id":["LAST"],"details":[null],"d_res_high":[1.03],"d_res_low":[16.01],"number_atoms_solvent":[82],"number_atoms_total":[337],"number_reflns_all":[null],"number_reflns_obs":[null],"number_reflns_R_free":[null],"number_reflns_R_work":[null],"R_factor_all":[null],"R_factor_obs":[null],"R_factor_R_free":[null],"R_factor_R_work":[null],"pdbx_number_residues_total":[null],"pdbx_B_iso_mean_ligand":[null],"pdbx_B_iso_mean_solvent":[null],"pdbx_number_atoms_protein":[0],"pdbx_number_atoms_nucleic_acid":[255],"pdbx_number_atoms_ligand":[0],"pdbx_number_atoms_lipid":[null],"pdbx_number_atoms_carb":[null],"pdbx_pseudo_atom_details":[null]},"refine_ls_restr":{"pdbx_refine_id":["X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION"],"criterion":[null,null,null,null,null],"dev_ideal":[0.0098,1.4355,0.064,0.0298,20.4506],"dev_ideal_target":[null,null,null,null,null],"number":[285,443,59,12,174],"rejects":[null,null,null,null,null],"type":["f_bond_d","f_angle_d","f_chiral_restr","f_plane_restr","f_dihedral_angle_d"],"weight":[null,null,null,null,null],"pdbx_Zscore":[null,null,null,null,null],"pdbx_restraint_function":[null,null,null,null,null]},"refine_ls_shell":{"pdbx_refine_id":["X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION","X-RAY DIFFRACTION"],"d_res_high":[1.03,1.06,1.09,1.13,1.18,1.23,1.3,1.38,1.49,1.63,1.87,2.36],"d_res_low":[1.06,1.09,1.13,1.18,1.23,1.3,1.38,1.49,1.63,1.87,2.36,16.01],"number_reflns_all":[null,null,null,null,null,null,null,null,null,null,null,null],"number_reflns_obs":[null,null,null,null,null,null,null,null,null,null,null,null],"number_reflns_R_free":[138,153,174,120,143,129,120,184,130,123,144,156],"number_reflns_R_work":[2615,2643,2657,2702,2652,2707,2692,2676,2688,2739,2704,2670],"percent_reflns_obs":[97.11,97.86,98.54,98.67,98.87,98.99,99.08,99.51,99.54,99.62,99.96,98.67],"percent_reflns_R_free":[null,null,null,null,null,null,null,null,null,null,null,null],"R_factor_all":[null,null,null,null,null,null,null,null,null,null,null,null],"R_factor_obs":[null,null,null,null,null,null,null,null,null,null,null,null],"R_factor_R_free_error":[null,null,null,null,null,null,null,null,null,null,null,null],"R_factor_R_work":[0.3823,0.3523,0.3065,0.2732,0.2315,0.1968,0.1916,0.1539,0.1513,0.1337,0.1545,0.1406],"redundancy_reflns_all":[null,null,null,null,null,null,null,null,null,null,null,null],"redundancy_reflns_obs":[null,null,null,null,null,null,null,null,null,null,null,null],"wR_factor_all":[null,null,null,null,null,null,null,null,null,null,null,null],"wR_factor_obs":[null,null,null,null,null,null,null,null,null,null,null,null],"wR_factor_R_free":[null,null,null,null,null,null,null,null,null,null,null,null],"wR_factor_R_work":[null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_R_complete":[null,null,null,null,null,null,null,null,null,null,null,null],"correlation_coeff_Fo_to_Fc":[null,null,null,null,null,null,null,null,null,null,null,null],"correlation_coeff_Fo_to_Fc_free":[null,null,null,null,null,null,null,null,null,null,null,null],"correlation_coeff_I_to_Fcsqd_work":[null,null,null,null,null,null,null,null,null,null,null,null],"correlation_coeff_I_to_Fcsqd_free":[null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_total_number_of_bins_used":[null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_phase_error":[null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_fsc_work":[null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_fsc_free":[null,null,null,null,null,null,null,null,null,null,null,null],"R_factor_R_free":[0.3826,0.3325,0.3145,0.2875,0.2339,0.2417,0.208,0.2278,0.131,0.134,0.1468,0.1618]},"struct":{"entry_id":["9YDI"],"title":["Dickerson dodecamer RNA duplex containing an A/G mismatch."],"pdbx_model_details":[null],"pdbx_formula_weight":[null],"pdbx_formula_weight_method":[null],"pdbx_model_type_details":[null],"pdbx_CASP_flag":["N"]},"struct_keywords":{"entry_id":["9YDI"],"text":["Dickerson dodecamer, RNA oligonuleotide, A/G mismatch, RNA"],"pdbx_keywords":["RNA"]},"struct_asym":{"id":["A","B"],"pdbx_blank_PDB_chainid_flag":["N","N"],"pdbx_modified":["N","N"],"entity_id":["1","2"],"details":[null,null]},"struct_ref":{"id":["1"],"db_name":["PDB"],"db_code":["9YDI"],"pdbx_db_accession":["9YDI"],"pdbx_db_isoform":[null],"entity_id":["1"],"pdbx_seq_one_letter_code":[null],"pdbx_align_begin":["1"]},"struct_ref_seq":{"align_id":["1"],"ref_id":["1"],"pdbx_PDB_id_code":["9YDI"],"pdbx_strand_id":["A"],"seq_align_beg":["1"],"pdbx_seq_align_beg_ins_code":[null],"seq_align_end":["12"],"pdbx_seq_align_end_ins_code":[null],"pdbx_db_accession":["9YDI"],"db_align_beg":[1],"pdbx_db_align_beg_ins_code":[null],"db_align_end":[12],"pdbx_db_align_end_ins_code":[null],"pdbx_auth_seq_align_beg":["1"],"pdbx_auth_seq_align_end":["12"]},"pdbx_struct_assembly":{"id":["1"],"details":["software_defined_assembly"],"method_details":["PISA"],"oligomeric_details":["dimeric"],"oligomeric_count":[2]},"pdbx_struct_assembly_gen":{"assembly_id":["1"],"oper_expression":["1,2"],"asym_id_list":["A,B"]},"pdbx_struct_assembly_auth_evidence":{"id":["1"],"assembly_id":["1"],"experimental_support":["none"],"details":[null]},"pdbx_struct_oper_list":{"id":["1","2"],"type":["identity operation","crystal symmetry operation"],"name":["1_555","2_656"],"symmetry_operation":["x,y,z","-x+1,y,-z+1"],"matrix[1][1]":[1,-1],"matrix[1][2]":[0,0],"matrix[1][3]":[0,0],"vector[1]":[0,21.1171319129],"matrix[2][1]":[0,0],"matrix[2][2]":[1,1],"matrix[2][3]":[0,0],"vector[2]":[0,0],"matrix[3][1]":[0,0],"matrix[3][2]":[0,0],"matrix[3][3]":[1,-1],"vector[3]":[0,24.8235933933]},"struct_conn":{"id":["hydrog1","hydrog2","hydrog3","hydrog4","hydrog5","hydrog6","hydrog7","hydrog8","hydrog9","hydrog10","hydrog11","hydrog12","hydrog13","hydrog14","hydrog15","hydrog16","hydrog17","hydrog18","hydrog19","hydrog20","hydrog21","hydrog22","hydrog23","hydrog24","hydrog25","hydrog26","hydrog27","hydrog28","hydrog29","hydrog30"],"conn_type_id":["hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog","hydrog"],"pdbx_leaving_atom_flag":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_PDB_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"ptnr1_label_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"],"ptnr1_label_comp_id":["C","C","C","G","G","G","C","C","C","G","G","A","A","A","A","U","U","U","U","A","A","G","G","G","C","C","C","G","G","G"],"ptnr1_label_seq_id":["1","1","1","2","2","2","3","3","3","4","4","5","5","6","6","7","7","8","8","9","9","10","10","10","11","11","11","12","12","12"],"ptnr1_label_atom_id":["N3","N4","O2","N1","N2","O6","N3","N4","O2","N1","O6","N1","N6","N1","N6","N3","O4","N3","O4","N1","N6","N1","N2","O6","N3","N4","O2","N1","N2","O6"],"pdbx_ptnr1_label_alt_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr1_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr1_standard_comp_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"ptnr1_symmetry":["1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555"],"ptnr2_label_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"],"ptnr2_label_comp_id":["G","G","G","C","C","C","G","G","G","A","A","U","U","U","U","A","A","A","A","G","G","C","C","C","G","G","G","C","C","C"],"ptnr2_label_seq_id":["12","12","12","11","11","11","10","10","10","9","9","8","8","7","7","6","6","5","5","4","4","3","3","3","2","2","2","1","1","1"],"ptnr2_label_atom_id":["N1","O6","N2","N3","O2","N4","N1","O6","N2","N1","N6","N3","O4","N3","O4","N1","N6","N1","N6","N1","O6","N3","O2","N4","N1","O6","N2","N3","O2","N4"],"pdbx_ptnr2_label_alt_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr2_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"ptnr1_auth_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"],"ptnr1_auth_comp_id":["C","C","C","G","G","G","C","C","C","G","G","A","A","A","A","U","U","U","U","A","A","G","G","G","C","C","C","G","G","G"],"ptnr1_auth_seq_id":["1","1","1","2","2","2","3","3","3","4","4","5","5","6","6","7","7","8","8","9","9","10","10","10","11","11","11","12","12","12"],"ptnr2_auth_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A"],"ptnr2_auth_comp_id":["G","G","G","C","C","C","G","G","G","A","A","U","U","U","U","A","A","A","A","G","G","C","C","C","G","G","G","C","C","C"],"ptnr2_auth_seq_id":["12","12","12","11","11","11","10","10","10","9","9","8","8","7","7","6","6","5","5","4","4","3","3","3","2","2","2","1","1","1"],"ptnr2_symmetry":["2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656"],"pdbx_ptnr3_label_atom_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr3_label_seq_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr3_label_comp_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr3_label_asym_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr3_label_alt_id":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_ptnr3_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"details":["WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","TYPE_8_PAIR","TYPE_8_PAIR","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","TYPE_8_PAIR","TYPE_8_PAIR","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK","WATSON-CRICK"],"pdbx_dist_value":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_value_order":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_role":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null]},"struct_conn_type":{"id":["hydrog"],"criteria":[null],"reference":[null]},"pdbx_entry_details":{"entry_id":["9YDI"],"compound_details":[null],"source_details":[null],"nonpolymer_details":[null],"sequence_details":[null],"has_ligand_of_interest":[null],"has_protein_modification":["N"]},"pdbx_validate_planes":{"id":[1],"PDB_model_num":[1],"auth_comp_id":["G"],"auth_asym_id":["A"],"auth_seq_id":["2"],"PDB_ins_code":[null],"label_alt_id":[null],"rmsd":[0.055],"type":["SIDE CHAIN"]},"pdbx_struct_special_symmetry":{"id":[1],"PDB_model_num":[1],"auth_asym_id":["A"],"auth_comp_id":["HOH"],"auth_seq_id":["118"],"PDB_ins_code":[null],"label_asym_id":["B"],"label_comp_id":["HOH"],"label_seq_id":[null]},"space_group_symop":{"id":["1","2","3","4"],"operation_xyz":["x,y,z","-x,y,-z","x+1/2,y+1/2,z","-x+1/2,y+1/2,-z"]},"chem_comp_atom":{"comp_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","HOH","HOH","HOH","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U"],"atom_id":["OP3","P","OP1","OP2","O5'","C5'","C4'","O4'","C3'","O3'","C2'","O2'","C1'","N9","C8","N7","C5","C6","N6","N1","C2","N3","C4","HOP3","HOP2","H5'","H5''","H4'","H3'","HO3'","H2'","HO2'","H1'","H8","H61","H62","H2","OP3","P","OP1","OP2","O5'","C5'","C4'","O4'","C3'","O3'","C2'","O2'","C1'","N1","C2","O2","N3","C4","N4","C5","C6","HOP3","HOP2","H5'","H5''","H4'","H3'","HO3'","H2'","HO2'","H1'","H41","H42","H5","H6","OP3","P","OP1","OP2","O5'","C5'","C4'","O4'","C3'","O3'","C2'","O2'","C1'","N9","C8","N7","C5","C6","O6","N1","C2","N2","N3","C4","HOP3","HOP2","H5'","H5''","H4'","H3'","HO3'","H2'","HO2'","H1'","H8","H1","H21","H22","O","H1","H2","OP3","P","OP1","OP2","O5'","C5'","C4'","O4'","C3'","O3'","C2'","O2'","C1'","N1","C2","O2","N3","C4","O4","C5","C6","HOP3","HOP2","H5'","H5''","H4'","H3'","HO3'","H2'","HO2'","H1'","H3","H5","H6"],"type_symbol":["O","P","O","O","O","C","C","O","C","O","C","O","C","N","C","N","C","C","N","N","C","N","C","H","H","H","H","H","H","H","H","H","H","H","H","H","H","O","P","O","O","O","C","C","O","C","O","C","O","C","N","C","O","N","C","N","C","C","H","H","H","H","H","H","H","H","H","H","H","H","H","H","O","P","O","O","O","C","C","O","C","O","C","O","C","N","C","N","C","C","O","N","C","N","N","C","H","H","H","H","H","H","H","H","H","H","H","H","H","H","O","H","H","O","P","O","O","O","C","C","O","C","O","C","O","C","N","C","O","N","C","O","C","C","H","H","H","H","H","H","H","H","H","H","H","H","H"],"pdbx_aromatic_flag":["N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","Y","Y","N","Y","Y","Y","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","Y","N","N","N","N","N","N","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_stereo_config":["N","N","N","N","N","N","R","N","S","N","R","N","R","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","R","N","S","N","R","N","R","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","R","N","S","N","R","N","R","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","R","N","S","N","R","N","R","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_ordinal":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147]},"chem_comp_bond":{"comp_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","HOH","HOH","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U","U"],"atom_id_1":["OP3","OP3","P","P","P","OP2","O5'","C5'","C5'","C5'","C4'","C4'","C4'","O4'","C3'","C3'","C3'","O3'","C2'","C2'","C2'","O2'","C1'","C1'","N9","N9","C8","C8","N7","C5","C5","C6","C6","N6","N6","N1","C2","C2","N3","OP3","OP3","P","P","P","OP2","O5'","C5'","C5'","C5'","C4'","C4'","C4'","O4'","C3'","C3'","C3'","O3'","C2'","C2'","C2'","O2'","C1'","C1'","N1","N1","C2","C2","N3","C4","C4","N4","N4","C5","C5","C6","OP3","OP3","P","P","P","OP2","O5'","C5'","C5'","C5'","C4'","C4'","C4'","O4'","C3'","C3'","C3'","O3'","C2'","C2'","C2'","O2'","C1'","C1'","N9","N9","C8","C8","N7","C5","C5","C6","C6","N1","N1","C2","C2","N2","N2","N3","O","O","OP3","OP3","P","P","P","OP2","O5'","C5'","C5'","C5'","C4'","C4'","C4'","O4'","C3'","C3'","C3'","O3'","C2'","C2'","C2'","O2'","C1'","C1'","N1","N1","C2","C2","N3","N3","C4","C4","C5","C5","C6"],"atom_id_2":["P","HOP3","OP1","OP2","O5'","HOP2","C5'","C4'","H5'","H5''","O4'","C3'","H4'","C1'","O3'","C2'","H3'","HO3'","O2'","C1'","H2'","HO2'","N9","H1'","C8","C4","N7","H8","C5","C6","C4","N6","N1","H61","H62","C2","N3","H2","C4","P","HOP3","OP1","OP2","O5'","HOP2","C5'","C4'","H5'","H5''","O4'","C3'","H4'","C1'","O3'","C2'","H3'","HO3'","O2'","C1'","H2'","HO2'","N1","H1'","C2","C6","O2","N3","C4","N4","C5","H41","H42","C6","H5","H6","P","HOP3","OP1","OP2","O5'","HOP2","C5'","C4'","H5'","H5''","O4'","C3'","H4'","C1'","O3'","C2'","H3'","HO3'","O2'","C1'","H2'","HO2'","N9","H1'","C8","C4","N7","H8","C5","C6","C4","O6","N1","C2","H1","N2","N3","H21","H22","C4","H1","H2","P","HOP3","OP1","OP2","O5'","HOP2","C5'","C4'","H5'","H5''","O4'","C3'","H4'","C1'","O3'","C2'","H3'","HO3'","O2'","C1'","H2'","HO2'","N1","H1'","C2","C6","O2","N3","C4","H3","O4","C5","C6","H5","H6"],"value_order":["sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","doub","sing","doub","sing","sing","sing","doub","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","doub","sing","sing","sing","sing","doub","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","doub","doub","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","doub","sing","doub","sing","sing"],"pdbx_aromatic_flag":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","N","Y","Y","Y","N","Y","N","N","Y","Y","N","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","N","Y","N","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_stereo_config":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_ordinal":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152]},"ndb_struct_conf_na":{"entry_id":["9YDI","9YDI","9YDI"],"feature":["double helix","a-form double helix","mismatched base pair"]},"ndb_struct_na_base_pair":{"model_number":[1,1,1,1,1,1,1,1,1,1,1,1],"i_label_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"i_label_comp_id":["C","G","C","G","A","A","U","U","A","G","C","G"],"i_label_seq_id":[1,2,3,4,5,6,7,8,9,10,11,12],"i_symmetry":["1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555"],"j_label_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"j_label_comp_id":["G","C","G","A","U","U","A","A","G","C","G","C"],"j_label_seq_id":[12,11,10,9,8,7,6,5,4,3,2,1],"j_symmetry":["2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656"],"shear":[0.119,-0.193,0.127,0.003,0.076,0.056,-0.056,-0.076,-0.003,-0.127,0.193,-0.119],"stretch":[-0.105,-0.166,-0.138,1.496,-0.055,-0.11,-0.11,-0.055,1.496,-0.138,-0.166,-0.105],"stagger":[-0.025,0.041,0.243,-0.273,0.209,0.033,0.033,0.209,-0.273,0.243,0.041,-0.025],"buckle":[8.44,-5.065,-4.489,3.017,2.482,3.238,-3.238,-2.482,-3.017,4.489,5.065,-8.44],"propeller":[-16.432,-17.588,-14.414,-7.301,-14.526,-22.777,-22.777,-14.526,-7.301,-14.414,-17.588,-16.432],"opening":[0.344,0.481,-2.643,-18.951,-3.588,-2.118,-2.118,-3.588,-18.951,-2.643,0.481,0.344],"pair_number":[1,2,3,4,5,6,7,8,9,10,11,12],"pair_name":["A_C1:G12_A","A_G2:C11_A","A_C3:G10_A","A_G4:A9_A","A_A5:U8_A","A_A6:U7_A","A_U7:A6_A","A_U8:A5_A","A_A9:G4_A","A_G10:C3_A","A_C11:G2_A","A_G12:C1_A"],"i_auth_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"i_auth_seq_id":["1","2","3","4","5","6","7","8","9","10","11","12"],"i_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null],"j_auth_asym_id":["A","A","A","A","A","A","A","A","A","A","A","A"],"j_auth_seq_id":["12","11","10","9","8","7","6","5","4","3","2","1"],"j_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null],"hbond_type_28":[19,19,19,8,20,20,20,20,8,19,19,19],"hbond_type_12":[1,1,1,1,1,1,1,1,1,1,1,1]},"ndb_struct_na_base_pair_step":{"model_number":[1,1,1,1,1,1,1,1,1,1,1],"i_label_asym_id_1":["A","A","A","A","A","A","A","A","A","A","A"],"i_label_comp_id_1":["C","G","C","G","A","A","U","U","A","G","C"],"i_label_seq_id_1":[1,2,3,4,5,6,7,8,9,10,11],"i_symmetry_1":["1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555"],"j_label_asym_id_1":["A","A","A","A","A","A","A","A","A","A","A"],"j_label_comp_id_1":["G","C","G","A","U","U","A","A","G","C","G"],"j_label_seq_id_1":[12,11,10,9,8,7,6,5,4,3,2],"j_symmetry_1":["2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656"],"i_label_asym_id_2":["A","A","A","A","A","A","A","A","A","A","A"],"i_label_comp_id_2":["G","C","G","A","A","U","U","A","G","C","G"],"i_label_seq_id_2":[2,3,4,5,6,7,8,9,10,11,12],"i_symmetry_2":["1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555","1_555"],"j_label_asym_id_2":["A","A","A","A","A","A","A","A","A","A","A"],"j_label_comp_id_2":["C","G","A","U","U","A","A","G","C","G","C"],"j_label_seq_id_2":[11,10,9,8,7,6,5,4,3,2,1],"j_symmetry_2":["2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656","2_656"],"shift":[-0.447,-0.493,-0.972,0.626,-0.194,0,0.194,-0.626,0.972,0.493,0.447],"slide":[-1.689,-1.314,-1.343,-1.494,-1.027,-1.19,-1.027,-1.494,-1.343,-1.314,-1.689],"rise":[3.431,3.186,3.084,3.185,3.212,3.382,3.212,3.185,3.084,3.186,3.431],"tilt":[-3.17,-2.356,2.156,-3.644,0.847,0,-0.847,3.644,-2.156,2.356,3.17],"roll":[13.154,3.993,9.468,12.269,6.326,11.006,6.326,12.269,9.468,3.993,13.154],"twist":[32.294,35.661,27.215,29.784,35.308,32.26,35.308,29.784,27.215,35.661,32.294],"x_displacement":[-4.723,-2.673,-4.518,-4.584,-2.534,-3.748,-2.534,-4.584,-4.518,-2.673,-4.723],"y_displacement":[0.284,0.477,2.366,-1.688,0.431,0,-0.431,1.688,-2.366,-0.477,-0.284],"helical_rise":[2.598,3.051,2.408,2.315,2.984,2.835,2.984,2.315,2.408,3.051,2.598],"inclination":[22.458,6.487,19.356,22.602,10.325,19.125,10.325,22.602,19.356,6.487,22.458],"tip":[5.412,3.827,-4.407,6.714,-1.382,0,1.382,-6.714,4.407,-3.827,-5.412],"helical_twist":[34.945,35.951,28.865,32.36,35.862,34.039,35.862,32.36,28.865,35.951,34.945],"step_number":[1,2,3,4,5,6,7,8,9,10,11],"step_name":["AA_C1G2:C11G12_AA","AA_G2C3:G10C11_AA","AA_C3G4:A9G10_AA","AA_G4A5:U8A9_AA","AA_A5A6:U7U8_AA","AA_A6U7:A6U7_AA","AA_U7U8:A5A6_AA","AA_U8A9:G4A5_AA","AA_A9G10:C3G4_AA","AA_G10C11:G2C3_AA","AA_C11G12:C1G2_AA"],"i_auth_asym_id_1":["A","A","A","A","A","A","A","A","A","A","A"],"i_auth_seq_id_1":["1","2","3","4","5","6","7","8","9","10","11"],"i_PDB_ins_code_1":[null,null,null,null,null,null,null,null,null,null,null],"j_auth_asym_id_1":["A","A","A","A","A","A","A","A","A","A","A"],"j_auth_seq_id_1":["12","11","10","9","8","7","6","5","4","3","2"],"j_PDB_ins_code_1":[null,null,null,null,null,null,null,null,null,null,null],"i_auth_asym_id_2":["A","A","A","A","A","A","A","A","A","A","A"],"i_auth_seq_id_2":["2","3","4","5","6","7","8","9","10","11","12"],"i_PDB_ins_code_2":[null,null,null,null,null,null,null,null,null,null,null],"j_auth_asym_id_2":["A","A","A","A","A","A","A","A","A","A","A"],"j_auth_seq_id_2":["11","10","9","8","7","6","5","4","3","2","1"],"j_PDB_ins_code_2":[null,null,null,null,null,null,null,null,null,null,null]},"pdbx_audit_support":{"funding_organization":["Other private"],"country":["United States"],"grant_number":[null],"ordinal":[1]},"pdbx_initial_refinement_model":{"id":[1],"entity_id_list":[null],"type":["experimental model"],"source_name":["PDB"],"accession_code":["2Q1R"],"details":[null]},"space_group":{"name_H-M_alt":["C 1 2 1"],"name_Hall":["C 2y"],"IT_number":[5],"crystal_system":["monoclinic"],"id":["1"]},"atom_sites":{"entry_id":["9YDI"],"Cartn_transf_matrix[1][1]":[null],"Cartn_transf_matrix[1][2]":[null],"Cartn_transf_matrix[1][3]":[null],"Cartn_transf_matrix[2][1]":[null],"Cartn_transf_matrix[2][2]":[null],"Cartn_transf_matrix[2][3]":[null],"Cartn_transf_matrix[3][1]":[null],"Cartn_transf_matrix[3][2]":[null],"Cartn_transf_matrix[3][3]":[null],"Cartn_transf_vector[1]":[null],"Cartn_transf_vector[2]":[null],"Cartn_transf_vector[3]":[null],"Cartn_transform_axes":[null],"fract_transf_matrix[1][1]":[0.024291],"fract_transf_matrix[1][2]":[0],"fract_transf_matrix[1][3]":[0.01962],"fract_transf_matrix[2][1]":[0],"fract_transf_matrix[2][2]":[0.028601],"fract_transf_matrix[2][3]":[0],"fract_transf_matrix[3][1]":[0],"fract_transf_matrix[3][2]":[0],"fract_transf_matrix[3][3]":[0.040284],"fract_transf_vector[1]":[0],"fract_transf_vector[2]":[0],"fract_transf_vector[3]":[0],"solution_primary":[null],"solution_secondary":[null],"solution_hydrogens":[null],"special_details":[null]},"atom_type":{"symbol":["C","H","N","O","P"],"scat_dispersion_real":[null,null,null,null,null],"scat_dispersion_imag":[null,null,null,null,null],"scat_Cromer_Mann_a1":[3.54356,0.53795,4.01032,4.49882,9.51135],"scat_Cromer_Mann_a2":[2.4258,0.34799,2.96436,3.47563,5.44231],"scat_Cromer_Mann_a3":[null,0.1132,null,null,null],"scat_Cromer_Mann_a4":[null,null,null,null,null],"scat_Cromer_Mann_b1":[25.62398,10.08003,19.97189,15.80542,1.42069],"scat_Cromer_Mann_b2":[1.50364,29.7476,1.75589,1.70748,35.72801],"scat_Cromer_Mann_b3":[null,2.5751,null,null,null],"scat_Cromer_Mann_b4":[null,null,null,null,null],"scat_Cromer_Mann_c":[0,0,0,0,0],"scat_source":["2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.","3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.","2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.","2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.","2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31."],"scat_dispersion_source":[null,null,null,null,null]}}}