{"data_9PZD":{"entry":{"id":["9PZD"]},"audit_conform":{"dict_name":["mmcif_pdbx.dic"],"dict_version":["5.416"],"dict_location":["http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic"]},"database_2":{"database_id":["PDB","WWPDB","EMDB"],"database_code":["9PZD","D_1000298872","EMD-72067"],"pdbx_database_accession":["pdb_00009pzd",null,null],"pdbx_DOI":["10.2210/pdb9pzd/pdb",null,null]},"pdbx_audit_revision_history":{"ordinal":[1,2],"data_content_type":["Structure model","EM metadata"],"major_revision":[1,1],"minor_revision":[0,0],"revision_date":["2026-08-12","2026-08-12"],"part_number":[null,null]},"pdbx_audit_revision_details":{"ordinal":[1,2],"revision_ordinal":[1,2],"data_content_type":["Structure model","EM metadata"],"provider":["repository","repository"],"type":["Initial release","Initial release"],"description":[null,null],"details":[null,null]},"pdbx_database_status":{"status_code":["REL"],"status_code_sf":[null],"status_code_mr":[null],"entry_id":["9PZD"],"recvd_initial_deposition_date":["2025-08-10"],"SG_entry":["N"],"deposit_site":["RCSB"],"process_site":["RCSB"],"status_code_cs":[null],"status_code_nmr_data":[null],"methods_development_category":[null],"pdb_format_compatible":["Y"]},"pdbx_database_related":{"db_name":["EMDB"],"details":["Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 2)"],"db_id":["EMD-72067"],"content_type":["associated EM volume"]},"pdbx_contact_author":{"id":[2],"email":["lukasz.joachimiak@utsouthwestern.edu"],"name_first":["Lukasz"],"name_last":["Joachimiak"],"name_mi":[null],"role":["principal investigator/group leader"],"identifier_ORCID":["0000-0003-3061-5850"]},"audit_author":{"name":["Singh, R.","Kaili, L.","Si, K.","Joachimiak, L."],"pdbx_ordinal":[1,2,3,4],"identifier_ORCID":["0000-0003-2456-7127",null,"0000-0002-9613-6273","0000-0003-3061-5850"]},"citation":{"abstract":[null],"abstract_id_CAS":[null],"book_id_ISBN":[null],"book_publisher":[null],"book_publisher_city":[null],"book_title":[null],"coordinate_linkage":[null],"country":[null],"database_id_Medline":[null],"details":[null],"id":["primary"],"journal_abbrev":["To Be Published"],"journal_id_ASTM":[null],"journal_id_CSD":["0353"],"journal_id_ISSN":[null],"journal_full":[null],"journal_issue":[null],"journal_volume":[null],"language":[null],"page_first":[null],"page_last":[null],"title":["Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 2)"],"year":[null],"database_id_CSD":[null],"pdbx_database_id_DOI":[null],"pdbx_database_id_PubMed":[null],"pdbx_database_id_patent":[null],"unpublished_flag":[null]},"citation_author":{"citation_id":["primary","primary","primary","primary"],"name":["Singh, R.","Kaili, L.","Si, K.","Joachimiak, L."],"ordinal":[1,2,3,4],"identifier_ORCID":["0000-0003-2456-7127",null,"0000-0002-9613-6273","0000-0003-3061-5850"]},"entity":{"id":["1"],"type":["polymer"],"src_method":["syn"],"pdbx_description":["Designed Orb2 Amyloid Core (LVLVF, Polymorph 2)"],"formula_weight":[3920.249],"pdbx_number_of_molecules":[10],"pdbx_ec":[null],"pdbx_mutation":[null],"pdbx_fragment":[null],"details":["Protofilament Assembly"]},"entity_poly":{"entity_id":["1"],"type":["polypeptide(L)"],"nstd_linkage":["no"],"nstd_monomer":["no"],"pdbx_seq_one_letter_code":["QLHQQQHQQQHLQHVQHLQQVQFHQHQQQLS"],"pdbx_seq_one_letter_code_can":["QLHQQQHQQQHLQHVQHLQQVQFHQHQQQLS"],"pdbx_strand_id":["A,B,C,D,E,F,G,H,I,J"],"pdbx_target_identifier":[null]},"entity_poly_seq":{"entity_id":["1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1"],"num":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31],"mon_id":["GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER"],"hetero":["n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n"]},"pdbx_entity_src_syn":{"entity_id":["1"],"pdbx_src_id":[1],"pdbx_alt_source_flag":["sample"],"pdbx_beg_seq_num":[1],"pdbx_end_seq_num":[31],"organism_scientific":["Drosophila melanogaster"],"organism_common_name":[null],"ncbi_taxonomy_id":["7227"],"details":[null]},"chem_comp":{"id":["GLN","HIS","LEU","PHE","SER","VAL"],"type":["L-peptide linking","L-peptide linking","L-peptide linking","L-peptide linking","L-peptide linking","L-peptide linking"],"mon_nstd_flag":["y","y","y","y","y","y"],"name":["GLUTAMINE","HISTIDINE","LEUCINE","PHENYLALANINE","SERINE","VALINE"],"pdbx_synonyms":[null,null,null,null,null,null],"formula":["C5 H10 N2 O3","C6 H10 N3 O2 1","C6 H13 N O2","C9 H11 N O2","C3 H7 N O3","C5 H11 N O2"],"formula_weight":[146.144,156.162,131.173,165.189,105.093,117.146]},"pdbx_poly_seq_scheme":{"asym_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J"],"entity_id":["1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1","1"],"seq_id":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31],"mon_id":["GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER"],"ndb_seq_num":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31],"pdb_seq_num":["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31"],"auth_seq_num":["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31"],"pdb_mon_id":["GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER"],"auth_mon_id":["GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER","GLN","LEU","HIS","GLN","GLN","GLN","HIS","GLN","GLN","GLN","HIS","LEU","GLN","HIS","VAL","GLN","HIS","LEU","GLN","GLN","VAL","GLN","PHE","HIS","GLN","HIS","GLN","GLN","GLN","LEU","SER"],"pdb_strand_id":["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","C","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","D","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","E","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","F","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","G","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","H","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","I","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J","J"],"pdb_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"hetero":["n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n","n"]},"exptl":{"absorpt_coefficient_mu":[null],"absorpt_correction_T_max":[null],"absorpt_correction_T_min":[null],"absorpt_correction_type":[null],"absorpt_process_details":[null],"entry_id":["9PZD"],"crystals_number":[null],"details":[null],"method":["ELECTRON MICROSCOPY"],"method_details":[null]},"struct":{"entry_id":["9PZD"],"title":["Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 2)"],"pdbx_model_details":[null],"pdbx_formula_weight":[null],"pdbx_formula_weight_method":[null],"pdbx_model_type_details":[null],"pdbx_CASP_flag":["N"]},"struct_keywords":{"entry_id":["9PZD"],"text":["Polymorph 2, Recombinant Protein, Orb2 Amyloid Core, Designed Mutants, PROTEIN FIBRIL"],"pdbx_keywords":["PROTEIN FIBRIL"]},"struct_asym":{"id":["A","B","C","D","E","F","G","H","I","J"],"pdbx_blank_PDB_chainid_flag":["N","N","N","N","N","N","N","N","N","N"],"pdbx_modified":["N","N","N","N","N","N","N","N","N","N"],"entity_id":["1","1","1","1","1","1","1","1","1","1"],"details":[null,null,null,null,null,null,null,null,null,null]},"struct_ref":{"id":["1"],"db_name":["PDB"],"db_code":["9PZD"],"pdbx_db_accession":["9PZD"],"pdbx_db_isoform":[null],"entity_id":["1"],"pdbx_seq_one_letter_code":[null],"pdbx_align_begin":["1"]},"struct_ref_seq":{"align_id":["1","2","3","4","5","6","7","8","9","10"],"ref_id":["1","1","1","1","1","1","1","1","1","1"],"pdbx_PDB_id_code":["9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD"],"pdbx_strand_id":["A","B","C","D","E","F","G","H","I","J"],"seq_align_beg":["1","1","1","1","1","1","1","1","1","1"],"pdbx_seq_align_beg_ins_code":[null,null,null,null,null,null,null,null,null,null],"seq_align_end":["31","31","31","31","31","31","31","31","31","31"],"pdbx_seq_align_end_ins_code":[null,null,null,null,null,null,null,null,null,null],"pdbx_db_accession":["9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD","9PZD"],"db_align_beg":[1,1,1,1,1,1,1,1,1,1],"pdbx_db_align_beg_ins_code":[null,null,null,null,null,null,null,null,null,null],"db_align_end":[31,31,31,31,31,31,31,31,31,31],"pdbx_db_align_end_ins_code":[null,null,null,null,null,null,null,null,null,null],"pdbx_auth_seq_align_beg":["1","1","1","1","1","1","1","1","1","1"],"pdbx_auth_seq_align_end":["31","31","31","31","31","31","31","31","31","31"]},"pdbx_struct_assembly":{"id":["1"],"details":["author_and_software_defined_assembly"],"method_details":[null],"oligomeric_details":["decameric"],"oligomeric_count":[10]},"pdbx_struct_assembly_gen":{"assembly_id":["1"],"oper_expression":["1"],"asym_id_list":["A,B,C,D,E,F,G,H,I,J"]},"pdbx_struct_assembly_auth_evidence":{"id":["1"],"assembly_id":["1"],"experimental_support":["electron microscopy"],"details":["not applicable"]},"pdbx_struct_oper_list":{"id":["1"],"type":["identity operation"],"name":["1_555"],"symmetry_operation":["x,y,z"],"matrix[1][1]":[1],"matrix[1][2]":[0],"matrix[1][3]":[0],"vector[1]":[0],"matrix[2][1]":[0],"matrix[2][2]":[1],"matrix[2][3]":[0],"vector[2]":[0],"matrix[3][1]":[0],"matrix[3][2]":[0],"matrix[3][3]":[1],"vector[3]":[0]},"struct_sheet":{"id":["AA1","AA2","AA3","AA4","AA5","AA6","AA7","AA8","AA9","AB1"],"type":[null,null,null,null,null,null,null,null,null,null],"number_strands":[2,5,2,4,5,2,2,2,2,2],"details":[null,null,null,null,null,null,null,null,null,null]},"struct_sheet_order":{"sheet_id":["AA1","AA2","AA2","AA2","AA2","AA3","AA4","AA4","AA4","AA5","AA5","AA5","AA5","AA6","AA7","AA8","AA9","AB1"],"range_id_1":["1","1","2","3","4","1","1","2","3","1","2","3","4","1","1","1","1","1"],"range_id_2":["2","2","3","4","5","2","2","3","4","2","3","4","5","2","2","2","2","2"],"offset":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"sense":["parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel","parallel"]},"struct_sheet_range":{"sheet_id":["AA1","AA1","AA2","AA2","AA2","AA2","AA2","AA3","AA3","AA4","AA4","AA4","AA4","AA5","AA5","AA5","AA5","AA5","AA6","AA6","AA7","AA7","AA8","AA8","AA9","AA9","AB1","AB1"],"id":["1","2","1","2","3","4","5","1","2","1","2","3","4","1","2","3","4","5","1","2","1","2","1","2","1","2","1","2"],"beg_label_comp_id":["GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","GLN","GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","GLN","GLN","HIS","HIS","GLN","GLN"],"beg_label_asym_id":["A","C","A","C","E","G","I","A","C","B","D","F","H","B","D","F","H","J","B","D","E","G","E","G","F","H","G","I"],"beg_label_seq_id":["5","5","11","11","11","11","11","26","26","3","3","3","3","9","9","9","11","11","26","26","7","7","22","22","26","26","27","27"],"pdbx_beg_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"end_label_comp_id":["GLN","GLN","LEU","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","GLN","GLN","LEU","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","PHE","PHE","GLN","GLN","LEU","LEU"],"end_label_asym_id":["A","C","A","C","E","G","I","A","C","B","D","F","H","B","D","F","H","J","B","D","E","G","E","G","F","H","G","I"],"end_label_seq_id":["6","6","12","12","12","12","12","27","27","4","4","4","4","12","12","12","12","12","27","27","8","8","23","23","27","27","30","30"],"pdbx_end_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"beg_auth_comp_id":["GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","GLN","GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","GLN","GLN","HIS","HIS","GLN","GLN"],"beg_auth_asym_id":["A","C","A","C","E","G","I","A","C","B","D","F","H","B","D","F","H","J","B","D","E","G","E","G","F","H","G","I"],"beg_auth_seq_id":["5","5","11","11","11","11","11","26","26","3","3","3","3","9","9","9","11","11","26","26","7","7","22","22","26","26","27","27"],"end_auth_comp_id":["GLN","GLN","LEU","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","GLN","GLN","LEU","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","PHE","PHE","GLN","GLN","LEU","LEU"],"end_auth_asym_id":["A","C","A","C","E","G","I","A","C","B","D","F","H","B","D","F","H","J","B","D","E","G","E","G","F","H","G","I"],"end_auth_seq_id":["6","6","12","12","12","12","12","27","27","4","4","4","4","12","12","12","12","12","27","27","8","8","23","23","27","27","30","30"]},"pdbx_struct_sheet_hbond":{"sheet_id":["AA1","AA2","AA2","AA2","AA2","AA3","AA4","AA4","AA4","AA5","AA5","AA5","AA5","AA6","AA7","AA8","AA9","AB1"],"range_id_1":["1","1","2","3","4","1","1","2","3","1","2","3","4","1","1","1","1","1"],"range_id_2":["2","2","3","4","5","2","2","3","4","2","3","4","5","2","2","2","2","2"],"range_1_label_atom_id":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","O","N","N","N"],"range_1_label_comp_id":["GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","GLN","HIS","LEU"],"range_1_label_asym_id":["A","A","C","E","G","A","B","D","F","B","D","F","H","B","E","E","F","G"],"range_1_label_seq_id":[5,11,11,11,11,26,3,3,3,11,11,11,11,26,7,22,26,30],"range_1_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"range_1_auth_atom_id":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","O","N","N","N"],"range_1_auth_comp_id":["GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","GLN","HIS","LEU"],"range_1_auth_asym_id":["A","A","C","E","G","A","B","D","F","B","D","F","H","B","E","E","F","G"],"range_1_auth_seq_id":["5","11","11","11","11","26","3","3","3","11","11","11","11","26","7","22","26","30"],"range_2_label_atom_id":["O","O","O","O","O","O","O","O","O","O","O","O","O","O","N","O","O","O"],"range_2_label_comp_id":["GLN","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","GLN","GLN","LEU","LEU","GLN","GLN","PHE","GLN","GLN"],"range_2_label_asym_id":["C","C","E","G","I","C","D","F","H","D","F","H","J","D","G","G","H","I"],"range_2_label_seq_id":[6,12,12,12,12,27,4,4,4,10,10,12,12,27,8,23,27,29],"range_2_PDB_ins_code":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"range_2_auth_atom_id":["O","O","O","O","O","O","O","O","O","O","O","O","O","O","N","O","O","O"],"range_2_auth_comp_id":["GLN","LEU","LEU","LEU","LEU","GLN","GLN","GLN","GLN","GLN","GLN","LEU","LEU","GLN","GLN","PHE","GLN","GLN"],"range_2_auth_asym_id":["C","C","E","G","I","C","D","F","H","D","F","H","J","D","G","G","H","I"],"range_2_auth_seq_id":["6","12","12","12","12","27","4","4","4","10","10","12","12","27","8","23","27","29"]},"pdbx_entry_details":{"entry_id":["9PZD"],"nonpolymer_details":[null],"sequence_details":[null],"compound_details":[null],"source_details":[null],"has_ligand_of_interest":[null],"has_protein_modification":["N"]},"pdbx_validate_torsion":{"id":[1,2,3,4,5,6,7],"PDB_model_num":[1,1,1,1,1,1,1],"auth_comp_id":["GLN","GLN","GLN","GLN","GLN","GLN","GLN"],"auth_asym_id":["B","D","D","F","F","H","J"],"auth_seq_id":["28","25","28","25","28","28","28"],"PDB_ins_code":[null,null,null,null,null,null,null],"label_alt_id":[null,null,null,null,null,null,null],"phi":[-103.83,-174.24,-101.45,-174.26,-101.44,-102.04,-103.87],"psi":[78.02,129.92,77.45,129.88,77.35,76.81,77.99]},"em_3d_fitting":{"id":["1"],"entry_id":["9PZD"],"method":[null],"target_criteria":["Cross Correlation Coefficient"],"details":["Initial model fitting was performed using Coot and Phenix, with final adjustments completed in ChimeraX."],"overall_b_value":[3878],"ref_space":["REAL"],"ref_protocol":["AB INITIO MODEL"]},"em_3d_fitting_list":{"id":["1"],"3d_fitting_id":["1"],"pdb_entry_id":[null],"pdb_chain_id":[null],"pdb_chain_residue_range":[null],"details":["Initial model generated using ModelAngelo from the cryo-EM map."],"chain_id":[null],"chain_residue_range":[null],"source_name":["Other"],"type":["in silico model"],"accession_code":[null],"initial_refinement_model_id":[null]},"em_3d_reconstruction":{"entry_id":["9PZD"],"id":["1"],"method":[null],"algorithm":["FOURIER SPACE"],"citation_id":[null],"details":[null],"resolution":[3.3],"resolution_method":["FSC 0.143 CUT-OFF"],"magnification_calibration":[null],"nominal_pixel_size":[null],"actual_pixel_size":[null],"num_particles":[94083],"euler_angles_details":[null],"num_class_averages":[1],"refinement_type":[null],"image_processing_id":["1"],"symmetry_type":["POINT"]},"em_buffer":{"id":["1"],"specimen_id":["1"],"name":[null],"details":["10mM HEPES, 75Mm NaCl, 2% glycerol, 2mM MgCl2, 10mM KCl"],"pH":[7.15]},"em_entity_assembly":{"id":["1"],"parent_id":[0],"source":["RECOMBINANT"],"type":["COMPLEX"],"name":["Cryo-EM Structure of designed Orb2 amyloid (LVLVF; Polymorph 2)"],"details":["Orb2 Amyloid Peptide are chemically synthesized"],"synonym":[null],"oligomeric_details":[null],"entity_id_list":["1"]},"em_imaging":{"entry_id":["9PZD"],"id":["1"],"astigmatism":[null],"electron_beam_tilt_params":[null],"residual_tilt":[null],"microscope_model":["TFS KRIOS"],"specimen_holder_type":[null],"specimen_holder_model":["FEI TITAN KRIOS AUTOGRID HOLDER"],"details":[null],"date":[null],"accelerating_voltage":[300],"illumination_mode":["FLOOD BEAM"],"mode":["BRIGHT FIELD"],"nominal_cs":[2.7],"nominal_defocus_min":[1000],"nominal_defocus_max":[2400],"calibrated_defocus_min":[null],"calibrated_defocus_max":[null],"tilt_angle_min":[null],"tilt_angle_max":[null],"nominal_magnification":[null],"calibrated_magnification":[null],"electron_source":["FIELD EMISSION GUN"],"citation_id":[null],"temperature":[null],"detector_distance":[null],"recording_temperature_minimum":[null],"recording_temperature_maximum":[null],"alignment_procedure":[null],"c2_aperture_diameter":[50],"specimen_id":["1"],"cryogen":["NITROGEN"],"objective_aperture":[null],"microscope_serial_number":[null],"microscope_version":[null]},"em_sample_support":{"id":["1"],"film_material":[null],"method":[null],"grid_material":["COPPER"],"grid_mesh_size":[300],"grid_type":["Quantifoil R1.2/1.3"],"details":[null],"specimen_id":["1"],"citation_id":[null]},"em_vitrification":{"entry_id":["9PZD"],"id":["1"],"specimen_id":["1"],"cryogen_name":["ETHANE"],"humidity":[95],"temp":[null],"chamber_temperature":[291.15],"instrument":["FEI VITROBOT MARK IV"],"method":[null],"time_resolved_state":[null],"citation_id":[null],"details":["Vitrification Carried out in liquid Nitrogen atmosphere"]},"em_experiment":{"entry_id":["9PZD"],"id":["1"],"reconstruction_method":["SINGLE PARTICLE"],"aggregation_state":["FILAMENT"],"entity_assembly_id":["1"]},"em_single_particle_entity":{"entry_id":["9PZD"],"id":[1],"image_processing_id":["1"],"point_symmetry":["C2"]},"chem_comp_atom":{"comp_id":["GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL"],"atom_id":["N","CA","C","O","CB","CG","CD","OE1","NE2","OXT","H","H2","HA","HB2","HB3","HG2","HG3","HE21","HE22","HXT","N","CA","C","O","CB","CG","ND1","CD2","CE1","NE2","OXT","H","H2","HA","HB2","HB3","HD1","HD2","HE1","HE2","HXT","N","CA","C","O","CB","CG","CD1","CD2","OXT","H","H2","HA","HB2","HB3","HG","HD11","HD12","HD13","HD21","HD22","HD23","HXT","N","CA","C","O","CB","CG","CD1","CD2","CE1","CE2","CZ","OXT","H","H2","HA","HB2","HB3","HD1","HD2","HE1","HE2","HZ","HXT","N","CA","C","O","CB","OG","OXT","H","H2","HA","HB2","HB3","HG","HXT","N","CA","C","O","CB","CG1","CG2","OXT","H","H2","HA","HB","HG11","HG12","HG13","HG21","HG22","HG23","HXT"],"type_symbol":["N","C","C","O","C","C","C","O","N","O","H","H","H","H","H","H","H","H","H","H","N","C","C","O","C","C","N","C","C","N","O","H","H","H","H","H","H","H","H","H","H","N","C","C","O","C","C","C","C","O","H","H","H","H","H","H","H","H","H","H","H","H","H","N","C","C","O","C","C","C","C","C","C","C","O","H","H","H","H","H","H","H","H","H","H","H","N","C","C","O","C","O","O","H","H","H","H","H","H","H","N","C","C","O","C","C","C","O","H","H","H","H","H","H","H","H","H","H","H"],"pdbx_aromatic_flag":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","Y","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","Y","Y","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_stereo_config":["N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","S","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_ordinal":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119]},"chem_comp_bond":{"comp_id":["GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","GLN","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","HIS","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","LEU","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","PHE","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","SER","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL","VAL"],"atom_id_1":["N","N","N","CA","CA","CA","C","C","CB","CB","CB","CG","CG","CG","CD","CD","NE2","NE2","OXT","N","N","N","CA","CA","CA","C","C","CB","CB","CB","CG","CG","ND1","ND1","CD2","CD2","CE1","CE1","NE2","OXT","N","N","N","CA","CA","CA","C","C","CB","CB","CB","CG","CG","CG","CD1","CD1","CD1","CD2","CD2","CD2","OXT","N","N","N","CA","CA","CA","C","C","CB","CB","CB","CG","CG","CD1","CD1","CD2","CD2","CE1","CE1","CE2","CE2","CZ","OXT","N","N","N","CA","CA","CA","C","C","CB","CB","CB","OG","OXT","N","N","N","CA","CA","CA","C","C","CB","CB","CB","CG1","CG1","CG1","CG2","CG2","CG2","OXT"],"atom_id_2":["CA","H","H2","C","CB","HA","O","OXT","CG","HB2","HB3","CD","HG2","HG3","OE1","NE2","HE21","HE22","HXT","CA","H","H2","C","CB","HA","O","OXT","CG","HB2","HB3","ND1","CD2","CE1","HD1","NE2","HD2","NE2","HE1","HE2","HXT","CA","H","H2","C","CB","HA","O","OXT","CG","HB2","HB3","CD1","CD2","HG","HD11","HD12","HD13","HD21","HD22","HD23","HXT","CA","H","H2","C","CB","HA","O","OXT","CG","HB2","HB3","CD1","CD2","CE1","HD1","CE2","HD2","CZ","HE1","CZ","HE2","HZ","HXT","CA","H","H2","C","CB","HA","O","OXT","OG","HB2","HB3","HG","HXT","CA","H","H2","C","CB","HA","O","OXT","CG1","CG2","HB","HG11","HG12","HG13","HG21","HG22","HG23","HXT"],"value_order":["sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","doub","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","doub","sing","sing","sing","doub","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","doub","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing","sing"],"pdbx_aromatic_flag":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","N","Y","N","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","Y","Y","Y","N","Y","N","Y","N","Y","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_stereo_config":["N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N","N"],"pdbx_ordinal":[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115]},"em_admin":{"current_status":["REL"],"deposition_date":["2025-08-10"],"deposition_site":["RCSB"],"entry_id":["9PZD"],"last_update":["2026-08-12"],"map_release_date":["2026-08-12"],"title":["Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 2)"]},"em_buffer_component":{"buffer_id":["1","1","1","1","1"],"concentration":[10,75,20,2,10],"concentration_units":["mM","mM","mg/ml","mM","mM"],"formula":["C8H18N2O4S","NaCl","C3H8O3","MgCl2","KCl"],"id":["1","2","3","4","5"],"name":["HEPES","Sodium Chloride","Glycerol","Magnesium Chloride","Potassium Chloride"]},"em_ctf_correction":{"details":[null],"em_image_processing_id":["1"],"id":["1"],"type":["PHASE FLIPPING AND AMPLITUDE CORRECTION"]},"em_entity_assembly_molwt":{"entity_assembly_id":["1"],"experimental_flag":["YES"],"id":["1"],"units":["KILODALTONS/NANOMETER"],"value":[4]},"em_entity_assembly_naturalsource":{"cell":[null],"cellular_location":[null],"entity_assembly_id":["1"],"id":["2"],"ncbi_tax_id":[7227],"organism":["Drosophila melanogaster"],"organelle":[null],"organ":[null],"strain":[null],"tissue":[null],"details":[null]},"em_entity_assembly_recombinant":{"cell":[null],"entity_assembly_id":["1"],"id":["2"],"ncbi_tax_id":[32630],"organism":["synthetic construct"],"plasmid":[null],"strain":[null]},"em_image_processing":{"details":[null],"id":["1"],"image_recording_id":["1"]},"em_image_recording":{"average_exposure_time":[6.25],"avg_electron_dose_per_subtomogram":[null],"avg_electron_dose_per_image":[60],"details":[null],"detector_mode":[null],"film_or_detector_model":["TFS FALCON 4i (4k x 4k)"],"id":["1"],"imaging_id":["1"],"num_diffraction_images":[null],"num_grids_imaged":[1],"num_real_images":[5994]},"em_imaging_optics":{"chr_aberration_corrector":[null],"energyfilter_lower":[null],"energyfilter_slit_width":[10],"energyfilter_name":["TFS Selectris"],"energyfilter_upper":[null],"id":["1"],"imaging_id":["1"],"phase_plate":[null],"sph_aberration_corrector":[null],"details":[null]},"em_particle_selection":{"details":[null],"id":["1"],"image_processing_id":["1"],"method":[null],"num_particles_selected":[2713980],"reference_model":[null]},"em_software":{"category":["PARTICLE SELECTION","IMAGE ACQUISITION","MASKING","CTF CORRECTION","LAYERLINE INDEXING","DIFFRACTION INDEXING","MODEL FITTING","OTHER","INITIAL EULER ASSIGNMENT","FINAL EULER ASSIGNMENT","CLASSIFICATION","RECONSTRUCTION","MODEL REFINEMENT"],"details":["GUI",null,null,"GUI",null,null,null,null,null,null,null,null,null],"id":["1","2","3","4","5","6","7","8","9","10","11","12","13"],"image_processing_id":["1",null,null,"1",null,null,null,null,"1","1","1","1",null],"fitting_id":[null,null,null,null,null,null,"1",null,null,null,null,null,"1"],"imaging_id":[null,"1",null,null,null,null,null,null,null,null,null,null,null],"name":["RELION","SerialEM",null,"CTFFIND",null,null,"Coot",null,"RELION","RELION","RELION","RELION","PHENIX"],"version":["5.0-Beta-1","4.0",null,null,null,null,"0.9.8.96",null,"5.0-beta-1-commit-b75b38","5.0-beta-1-commit-b75b38","5.0-beta-1-commit-b75b38","5.0-beta-1-commit-b75b38","1.21"],"reference_DOI":[null,null,null,null,null,null,null,null,null,null,null,null,null]},"em_specimen":{"concentration":[0.5],"details":["Homogenous"],"embedding_applied":[false],"experiment_id":["1"],"id":["1"],"shadowing_applied":[false],"staining_applied":[false],"vitrification_applied":[true]},"pdbx_audit_support":{"funding_organization":["Chan Zuckerberg Initiative"],"country":["United States"],"grant_number":["CP2-1-0000000296"],"ordinal":[1]},"pdbx_initial_refinement_model":{"id":[1],"type":["in silico model"],"source_name":["Other"],"accession_code":[null]},"atom_sites":{"entry_id":["9PZD"],"Cartn_transf_matrix[1][1]":[null],"Cartn_transf_matrix[1][2]":[null],"Cartn_transf_matrix[1][3]":[null],"Cartn_transf_matrix[2][1]":[null],"Cartn_transf_matrix[2][2]":[null],"Cartn_transf_matrix[2][3]":[null],"Cartn_transf_matrix[3][1]":[null],"Cartn_transf_matrix[3][2]":[null],"Cartn_transf_matrix[3][3]":[null],"Cartn_transf_vector[1]":[null],"Cartn_transf_vector[2]":[null],"Cartn_transf_vector[3]":[null],"Cartn_transform_axes":[null],"fract_transf_matrix[1][1]":[1],"fract_transf_matrix[1][2]":[0],"fract_transf_matrix[1][3]":[0],"fract_transf_matrix[2][1]":[0],"fract_transf_matrix[2][2]":[1],"fract_transf_matrix[2][3]":[0],"fract_transf_matrix[3][1]":[0],"fract_transf_matrix[3][2]":[0],"fract_transf_matrix[3][3]":[1],"fract_transf_vector[1]":[0],"fract_transf_vector[2]":[0],"fract_transf_vector[3]":[0],"solution_primary":[null],"solution_secondary":[null],"solution_hydrogens":[null],"special_details":[null]},"atom_type":{"symbol":["C","N","O"]}}}