{"data_9PVW":{"entry":{"id":["9PVW"]},"audit_conform":{"dict_name":["mmcif_pdbx.dic"],"dict_version":["5.414"],"dict_location":["http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic"]},"database_2":{"database_id":["PDB","WWPDB"],"database_code":["9PVW","D_1000298133"],"pdbx_database_accession":["pdb_00009pvw",null],"pdbx_DOI":["10.2210/pdb9pvw/pdb",null]},"pdbx_audit_revision_history":{"ordinal":[1],"data_content_type":["Structure model"],"major_revision":[1],"minor_revision":[0],"revision_date":["2026-06-10"],"part_number":[null]},"pdbx_audit_revision_details":{"ordinal":[1],"revision_ordinal":[1],"data_content_type":["Structure model"],"provider":["repository"],"type":["Initial release"],"description":[null],"details":[null]},"pdbx_database_status":{"status_code":["REL"],"status_code_sf":["REL"],"status_code_mr":[null],"entry_id":["9PVW"],"recvd_initial_deposition_date":["2025-08-03"],"SG_entry":["N"],"deposit_site":["RCSB"],"process_site":["RCSB"],"status_code_cs":[null],"status_code_nmr_data":[null],"methods_development_category":[null],"pdb_format_compatible":["Y"]},"pdbx_contact_author":{"id":[2],"email":["dongwang@ucsd.edu"],"name_first":["Dong"],"name_last":["Wang"],"name_mi":[null],"role":["principal investigator/group leader"],"identifier_ORCID":["0000-0002-2829-1546"]},"audit_author":{"name":["Hou, P.","Oh, J.","Wang, D."],"pdbx_ordinal":[1,2,3],"identifier_ORCID":["0000-0002-5214-8029","0000-0002-7625-2779","0000-0002-2829-1546"]},"citation":{"abstract":[null],"abstract_id_CAS":[null],"book_id_ISBN":[null],"book_publisher":[null],"book_publisher_city":[null],"book_title":[null],"coordinate_linkage":[null],"country":["US"],"database_id_Medline":[null],"details":[null],"id":["primary"],"journal_abbrev":["Proc.Natl.Acad.Sci.USA"],"journal_id_ASTM":["PNASA6"],"journal_id_CSD":["0040"],"journal_id_ISSN":["1091-6490"],"journal_full":[null],"journal_issue":[null],"journal_volume":["123"],"language":[null],"page_first":["e2602266123"],"page_last":["e2602266123"],"title":["Structural basis of transcription-coupled RNA damage by incorporation of oxidized ribonucleotides."],"year":[2026],"database_id_CSD":[null],"pdbx_database_id_DOI":["10.1073/pnas.2602266123"],"pdbx_database_id_PubMed":[41980106],"pdbx_database_id_patent":[null],"unpublished_flag":[null]},"citation_author":{"citation_id":["primary","primary","primary","primary","primary"],"name":["Hou, P.","Lee, C.","Chong, J.","Oh, J.","Wang, D."],"ordinal":[1,2,3,4,5],"identifier_ORCID":["0000-0002-5214-8029",null,null,"0000-0002-7625-2779","0000-0002-2829-1546"]},"entity":{"id":["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16"],"type":["polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","polymer","non-polymer","non-polymer","non-polymer"],"src_method":["syn","syn","syn","man","man","man","man","man","man","man","man","man","man","syn","syn","syn"],"pdbx_description":["RNA with 8-oxo-guanine added to 3' end. Syn-conformation.","Template strand DNA","Non-template strand DNA","DNA-directed RNA polymerase II subunit RPB1","DNA-directed RNA polymerase II subunit RPB2","DNA-directed RNA polymerase II subunit RPB3","DNA-directed RNA polymerases I, II, and III subunit RPABC1","DNA-directed RNA polymerases I, II, and III subunit RPABC2","DNA-directed RNA polymerases I, II, and III subunit RPABC3","DNA-directed RNA polymerase II subunit RPB9","DNA-directed RNA polymerases I, II, and III subunit RPABC5","DNA-directed RNA polymerase II subunit RPB11","DNA-directed RNA polymerases I, II, and III subunit RPABC4","ZINC ION","MAGNESIUM ION","PYROPHOSPHATE 2-"],"formula_weight":[3296.035,8723.595,5663.694,191821.578,138937.297,35330.457,25117.094,17931.834,16525.363,14308.161,8290.732,13633.493,7729.969,65.409,24.305,175.959],"pdbx_number_of_molecules":[1,1,1,1,1,1,1,1,1,1,1,1,1,8,1,1],"pdbx_ec":[null,null,null,"2.7.7.6","2.7.7.6",null,null,null,null,null,null,null,null,null,null,null],"pdbx_mutation":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"pdbx_fragment":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],"details":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null]},"entity_name_com":{"entity_id":["4","5","6","7","8","9","10","11","12","13"],"name":["RNA polymerase II subunit B1,DNA-directed RNA polymerase III largest subunit,RNA polymerase II subunit B220","RNA polymerase II subunit 2,B150,DNA-directed RNA polymerase II 140 kDa polypeptide","RNA polymerase II subunit B3,B44.5,DNA-directed RNA polymerase II 45 kDa polypeptide","RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide","RNA polymerases I,II,and III subunit ABC2,ABC23,DNA-directed RNA polymerases I,and III 23 kDa polypeptide","RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide","RNA polymerase II subunit B9,B12.6,DNA-directed RNA polymerase II 14.2 kDa polypeptide,DNA-directed RNA polymerase II subunit 9","RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide","RNA polymerase II subunit B11,B13.6,DNA-directed RNA polymerase II 13.6 kDa polypeptide","RNA polymerases I,II,and III subunit ABC4,ABC10-alpha"]},"entity_poly":{"entity_id":["1","2","3","4","5","6","7","8","9","10","11","12","13"],"type":["polyribonucleotide","polydeoxyribonucleotide","polydeoxyribonucleotide","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)","polypeptide(L)"],"nstd_linkage":["no","no","no","no","no","no","no","no","no","no","no","no","no"],"nstd_monomer":["yes","no","no","no","no","no","no","no","no","no","no","no","no"],"pdbx_seq_one_letter_code":["AUCGAGAGG(8GM)","(DC)(DC)(DT)(DT)(DC)(DT)(DC)(DT)(DC)(DT)(DC)(DT)(DC)(DG)(DC)(DT)(DG)(DA)(DA)(DC)\n(DC)(DT)(DC)(DT)(DC)(DG)(DA)(DT)(DG)","(DT)(DC)(DA)(DG)(DC)(DG)(DA)(DG)(DA)(DG)(DA)(DG)(DA)(DG)(DA)(DA)(DG)(DG)","MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGH\nFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQ\nLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP\nVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGR\nPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP\nGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA\nDFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVI\nPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ\nVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR\nFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV\nENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK\nQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI\nRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQ\nAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL\nEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA\nAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIE\nRVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDG\nSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA\nFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT\nSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP\nTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP\nSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR","MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE\nSDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDS\nESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI\nRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED\nGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH\nFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS\nQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSE\nWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIV\nEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND\nLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ\nKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT\nNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG\nLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN\nEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVE\nGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA\nKLLFQELMAMNITPRLYTDRSRDF","MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQL\nEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAK\nKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV\nDQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNTASNMLGSNEDVMMTGAEQDPYSNASQMGNTGSGGYDNAW","MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWV\nEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDE\nKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM","MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRA\nTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL","MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR\nPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR","MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHS\nRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQFS","MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD","MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG\nYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF","MSREGFQIPTNLDAAA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