C28 H37 N5 O5 523.624 4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide N 0 Corina N 2025-03-03 9QBM N 2026-03-06 PDBE REL HETAIN A1I47 non-polymer C1 0 32.261 8.632 -8.747 1 Y C22 A1I47 N -5.091 -0.077 0.443 1 N C C2 0 33.413 7.899 -8.490 1 Y C21 A1I47 N -4.747 0.763 -0.608 2 N C C3 0 36.737 9.717 -5.715 1 N C16 A1I47 N -0.102 -0.614 -0.334 3 N C C4 0 37.465 9.838 -4.400 1 N C15 A1I47 N 1.370 -0.217 -0.463 4 N C C5 0 42.299 9.029 -0.255 1 N C6 A1I47 N 7.695 -0.535 -0.634 5 N C C6 0 41.430 9.350 -1.429 1 Y C8 A1I47 N 6.241 -0.805 -0.394 6 N C C7 0 40.697 8.293 -1.970 1 Y C9 A1I47 N 5.765 -2.039 0.021 7 N C C8 0 39.863 8.493 -3.052 1 Y C10 A1I47 N 4.392 -2.207 0.123 8 N C C9 0 39.222 6.194 -3.112 1 N C12 A1I47 N 4.812 -4.437 0.839 9 N C C10 0 42.029 11.229 0.922 1 N C1 A1I47 N 7.395 1.307 0.997 10 S C C11 0 39.746 9.776 -3.616 1 Y C13 A1I47 N 3.539 -1.149 -0.193 11 N C C12 0 35.291 9.289 -5.514 1 N C17 A1I47 N -0.987 0.582 -0.692 12 N C C13 0 34.449 9.366 -6.763 1 N C18 A1I47 N -2.436 0.191 -0.565 13 N C C14 0 42.862 11.719 2.106 1 N C2 A1I47 N 8.409 2.208 1.747 14 N C C15 0 31.489 8.356 -9.861 1 Y C23 A1I47 N -6.415 -0.400 0.664 15 N C C16 0 31.853 7.342 -10.742 1 Y C24 A1I47 N -7.404 0.120 -0.162 16 N C C17 0 29.966 7.976 -12.146 1 N C26 A1I47 N -9.150 0.137 1.432 17 N C C18 0 29.029 7.358 -13.168 1 N C27 A1I47 N -10.596 -0.308 1.661 18 N C C19 0 28.832 6.463 -15.392 1 N C29 A1I47 N -12.878 0.003 0.912 19 N C C20 0 44.284 11.405 1.687 1 N C3 A1I47 N 9.796 1.679 1.305 20 N C C21 0 30.838 6.118 -14.109 1 N C30 A1I47 N -11.065 0.002 -0.693 21 N C C22 0 31.796 6.721 -13.098 1 N C31 A1I47 N -9.618 0.447 -0.922 22 N C C23 0 33.007 6.610 -10.480 1 Y C32 A1I47 N -7.060 0.964 -1.210 23 N C C24 0 33.780 6.885 -9.366 1 Y C33 A1I47 N -5.735 1.278 -1.437 24 N C C25 0 40.471 10.825 -3.085 1 Y C34 A1I47 N 4.037 0.088 -0.572 25 N C C26 0 41.317 10.635 -1.994 1 Y C35 A1I47 N 5.417 0.273 -0.645 26 N C C27 0 41.835 12.259 -0.181 1 N C37 A1I47 N 6.486 2.360 0.189 27 S C C28 0 44.188 10.101 0.906 1 N C4 A1I47 N 9.508 1.200 -0.140 28 N C N1 0 34.211 8.172 -7.353 1 N N20 A1I47 N -3.403 1.091 -0.832 29 N N N2 0 31.087 7.076 -11.867 1 N N25 A1I47 N -8.745 -0.207 0.062 30 N N N3 0 29.742 7.040 -14.403 1 N N28 A1I47 N -11.469 0.347 0.677 31 N N N4 0 42.040 11.733 -1.508 1 N N36 A1I47 N 5.959 1.500 -0.907 32 N N N5 0 42.785 10.059 0.463 1 N N5 A1I47 N 8.194 0.581 -0.033 33 N N O1 0 39.141 7.506 -3.663 1 N O11 A1I47 N 3.879 -3.400 0.531 34 N O O2 0 38.873 9.938 -4.659 1 N O14 A1I47 N 2.196 -1.334 -0.129 35 N O O3 0 34.032 10.438 -7.191 1 N O19 A1I47 N -2.733 -0.934 -0.221 36 N O O4 0 40.551 12.811 -0.024 1 N O38 A1I47 N 5.426 2.858 1.008 37 N O O5 0 42.550 7.871 0.024 1 N O7 A1I47 N 8.385 -1.267 -1.318 38 N O H1 0 31.966 9.422 -8.073 1 N H22 A1I47 N -4.322 -0.481 1.085 39 N H H2 0 36.754 10.692 -6.224 0 N H16B A1I47 N -0.317 -1.440 -1.012 40 N H H3 0 37.248 8.969 -6.339 0 N H16A A1I47 N -0.306 -0.923 0.691 41 N H H4 0 37.265 8.949 -3.783 0 N H15B A1I47 N 1.574 0.092 -1.488 42 N H H5 0 37.122 10.738 -3.869 0 N H15A A1I47 N 1.584 0.609 0.215 43 N H H6 0 40.783 7.307 -1.537 1 N H9 A1I47 N 6.443 -2.846 0.257 44 N H H7 0 38.595 5.509 -3.701 0 N H12A A1I47 N 5.468 -4.109 1.645 45 N H H8 0 40.266 5.849 -3.138 0 N H12B A1I47 N 4.273 -5.331 1.150 46 N H H9 0 38.868 6.211 -2.071 0 N H12C A1I47 N 5.409 -4.662 -0.045 47 N H H10 0 41.042 10.911 1.290 1 N H1 A1I47 N 6.822 0.656 1.657 48 N H H11 0 35.285 8.249 -5.156 0 N H17A A1I47 N -0.772 1.408 -0.014 49 N H H12 0 34.840 9.942 -4.752 0 N H17B A1I47 N -0.782 0.891 -1.717 50 N H H13 0 42.727 12.799 2.262 1 N H2A A1I47 N 8.286 3.249 1.449 51 N H H14 0 42.594 11.179 3.026 1 N H2B A1I47 N 8.287 2.103 2.825 52 N H H15 0 30.595 8.933 -10.049 1 N H23 A1I47 N -6.682 -1.056 1.479 53 N H H16 0 29.412 8.164 -11.214 0 N H26B A1I47 N -9.075 1.215 1.573 54 N H H17 0 30.355 8.927 -12.540 0 N H26A A1I47 N -8.497 -0.369 2.143 55 N H H18 0 28.600 6.435 -12.752 0 N H27B A1I47 N -10.666 -1.390 1.547 56 N H H19 0 28.220 8.069 -13.392 0 N H27A A1I47 N -10.908 -0.027 2.667 57 N H H20 0 29.389 6.232 -16.312 0 N H29B A1I47 N -13.170 0.330 1.910 58 N H H21 0 28.390 5.540 -14.989 0 N H29A A1I47 N -13.502 0.501 0.169 59 N H H22 0 28.032 7.184 -15.619 0 N H29C A1I47 N -13.007 -1.076 0.830 60 N H H23 0 44.685 12.208 1.051 1 N H3B A1I47 N 10.538 2.478 1.310 61 N H H24 0 44.928 11.280 2.570 1 N H3A A1I47 N 10.115 0.849 1.935 62 N H H25 0 30.424 5.185 -13.700 0 N H30B A1I47 N -11.718 0.509 -1.404 63 N H H26 0 31.385 5.901 -15.038 0 N H30A A1I47 N -11.140 -1.076 -0.835 64 N H H27 0 32.583 5.989 -12.864 0 N H31B A1I47 N -9.306 0.167 -1.928 65 N H H28 0 32.252 7.626 -13.527 0 N H31A A1I47 N -9.548 1.529 -0.808 66 N H H29 0 33.302 5.819 -11.153 1 N H32 A1I47 N -7.829 1.368 -1.852 67 N H H30 0 34.673 6.308 -9.176 1 N H33 A1I47 N -5.468 1.935 -2.252 68 N H H31 0 40.381 11.808 -3.522 1 N H34 A1I47 N 3.364 0.899 -0.809 69 N H H32 0 42.577 13.053 -0.013 1 N H37 A1I47 N 7.090 3.177 -0.207 70 N H H33 0 44.871 10.110 0.044 1 N H4A A1I47 N 9.477 2.046 -0.827 71 N H H34 0 44.421 9.240 1.550 1 N H4B A1I47 N 10.253 0.471 -0.460 72 N H H35 0 34.656 7.381 -6.932 1 N H20 A1I47 N -3.169 1.965 -1.180 73 N H H37 0 43.005 11.478 -1.561 1 N H36 A1I47 N 6.001 1.816 -1.823 74 N H H38 0 40.456 13.145 0.860 1 N H38 A1I47 N 4.852 3.497 0.562 75 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N sing Y 8 N doub Y 9 N sing N 10 N sing N 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N doub N 19 N sing N 20 N sing Y 21 N doub Y 22 N sing Y 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing Y 31 N sing Y 32 N doub Y 33 N sing Y 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing Y 40 N sing Y 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing PDBE RCSB InChI=1S/C28H37N5O5/c1-31-12-14-32(15-13-31)20-9-7-19(8-10-20)29-26(34)6-4-16-38-25-18-22-21(17-24(25)37-2)28(36)33-11-3-5-23(33)27(35)30-22/h7-10,17-18,23,27,30,35H,3-6,11-16H2,1-2H3,(H,29,34)/t23-,27-/m0/s1 YIRFQMMIJFIHKS-HOFKKMOUSA-N COc1cc2C(=O)N3CCC[C@H]3[C@H](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5 COc1cc2C(=O)N3CCC[CH]3[CH](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5 CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCC[C@H]5[C@@H](N4)O CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCCC5C(N4)O 4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide