C9 H16 N3 O12 P3 S 483.223 2'-deoxycytidine-5'-(alpha-thio)-triphosphate, Sp isomer N 0 Corina N 2025-09-22 9Y62 N 2026-06-12 RCSB REL [[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphinothioyl] phosphono hydrogen phosphate, Sp isomer HETAIN A1CU0 non-polymer O1 0 3.426 7.460 11.249 1 N O4' A1CU0 N 2.912 -0.313 -0.633 1 N O O2 0 6.295 7.892 8.466 1 N O2 A1CU0 N 4.540 0.049 1.411 2 N O O3 0 3.047 6.110 14.078 1 N O5' A1CU0 N 0.170 -1.184 -0.176 3 N O C1 0 3.948 5.799 9.659 1 N C2' A1CU0 N 4.855 -1.630 -0.954 4 N C C2 0 3.305 5.120 10.861 1 N C3' A1CU0 N 3.641 -2.564 -0.751 5 S C C3 0 2.897 6.247 11.763 1 N C4' A1CU0 N 2.419 -1.637 -0.935 6 R C C4 0 4.322 7.180 10.189 1 N C1' A1CU0 N 4.223 -0.249 -1.236 7 R C N1 0 5.731 7.176 10.601 1 N N1 A1CU0 N 5.018 0.813 -0.614 8 N N C5 0 6.143 6.777 11.844 1 N C5 A1CU0 N 5.652 1.731 -1.396 9 N C C6 0 7.487 6.779 12.168 1 N C1 A1CU0 N 6.384 2.708 -0.809 10 N C C7 0 8.397 7.142 11.176 1 N C4 A1CU0 N 6.469 2.746 0.598 11 N C N2 0 7.991 7.521 9.940 1 N N4 A1CU0 N 5.835 1.831 1.318 12 N N C8 0 6.669 7.539 9.642 1 N C2 A1CU0 N 5.114 0.879 0.727 13 N C N3 0 9.719 7.144 11.450 1 N N2 A1CU0 N 7.206 3.727 1.219 14 N N C9 0 3.799 6.006 12.940 1 N C5' A1CU0 N 1.305 -2.025 0.040 15 N C P1 0 3.504 4.857 14.879 1 N PA A1CU0 N -1.191 -1.312 0.676 16 S P S1 0 5.411 4.929 15.471 1 N S1 A1CU0 N -1.664 -3.109 0.824 17 N S O4 0 2.691 4.813 16.135 1 N O2A A1CU0 N -0.964 -0.694 2.145 18 N O O5 0 3.464 3.620 13.923 1 N O3A A1CU0 N -2.368 -0.507 -0.069 19 N O P2 0 2.580 2.345 14.109 1 N PB A1CU0 N -3.925 -0.250 0.252 20 N P O6 0 1.141 2.566 14.435 1 N O2B A1CU0 N -4.765 -1.587 -0.060 21 N O O7 0 2.495 1.752 12.727 1 N O1B A1CU0 N -4.081 0.109 1.679 22 N O O8 0 3.425 1.507 15.117 1 N O3B A1CU0 N -4.471 0.954 -0.667 23 N O P3 0 2.735 0.343 15.932 1 N PG A1CU0 N -5.735 1.947 -0.574 24 N P O9 0 3.769 -0.023 16.945 1 N O2G A1CU0 N -7.074 1.150 -0.979 25 N O O10 0 2.534 -0.782 14.941 1 N O1G A1CU0 N -5.863 2.455 0.810 26 N O O11 0 1.407 0.681 16.603 1 N O3G A1CU0 N -5.521 3.184 -1.582 27 N O O12 0 2.169 4.340 10.579 1 N O3' A1CU0 N 3.636 -3.600 -1.736 28 N O H1 0 3.236 5.878 8.824 0 N H2'1 A1CU0 N 5.464 -1.594 -0.051 29 N H H2 0 4.842 5.249 9.328 0 N H2'2 A1CU0 N 5.451 -1.958 -1.805 30 N H H3 0 4.067 4.512 11.371 1 N H3' A1CU0 N 3.650 -2.990 0.252 31 N H H4 0 1.826 6.261 12.012 1 N H4' A1CU0 N 2.059 -1.683 -1.962 32 N H H5 0 4.185 7.912 9.379 1 N H1' A1CU0 N 4.141 -0.081 -2.310 33 N H H6 0 5.414 6.459 12.575 1 N H6 A1CU0 N 5.572 1.680 -2.472 34 N H H7 0 7.822 6.508 13.158 1 N H5 A1CU0 N 6.895 3.446 -1.410 35 N H H8 0 10.375 7.421 10.748 0 N HN41 A1CU0 N 7.669 4.395 0.690 36 N H H9 0 10.042 6.868 12.355 0 N HN42 A1CU0 N 7.263 3.751 2.188 37 N H H10 0 4.238 5.000 12.874 0 N H5'1 A1CU0 N 1.659 -1.903 1.063 38 N H H11 0 4.603 6.757 12.954 0 N H5'2 A1CU0 N 1.023 -3.065 -0.126 39 N H H12 0 3.270 4.830 16.888 1 N H12 A1CU0 N -0.715 0.240 2.145 40 N H H13 0 0.603 2.281 13.706 1 N H13 A1CU0 N -4.709 -1.882 -0.979 41 N H H14 0 4.096 -0.896 16.763 1 N H14 A1CU0 N -7.061 0.789 -1.876 42 N H H15 0 0.725 0.115 16.260 1 N H15 A1CU0 N -6.246 3.824 -1.578 43 N H H16 0 1.839 3.958 11.384 0 N HO3' A1CU0 N 4.412 -4.175 -1.705 44 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N doub N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing RCSB RCSB InChI=1S/C9H16N3O12P3S/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(22-8)4-21-27(20,28)24-26(18,19)23-25(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,28)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+,27-/m0/s1 CBYOGVVSAABFCZ-HAHHPWOESA-N NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P@](O)(=S)O[P](O)(=O)O[P](O)(O)=O)O2 NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=S)O[P](O)(=O)O[P](O)(O)=O)O2 C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO[P@@](=S)(O)OP(=O)(O)OP(=O)(O)O)O C1C(C(OC1N2C=CC(=NC2=O)N)COP(=S)(O)OP(=O)(O)OP(=O)(O)O)O [[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphinothioyl] phosphono hydrogen phosphate [[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphinothioyl] phosphono hydrogen phosphate, Sp isomer PDB